RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PRDM16Q9HAZ2 1276 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ACSS2Q9NR19 701 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 PRKAB1Q9Y478 270 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 H3BNC9 293 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 FFAR2O15552 330 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 MYBL2P10244 700 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 CYP2A7P20853 494 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ACTR1BP42025 376 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 PEX5P50542 639 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ACTR1AP61163 376 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ZNF542PQ5EBM4 170 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 TMC3Q7Z5M5 1100 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 GLIS1Q8NBF1 620 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 CPT1BQ92523 772 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 MTFMTQ96DP5 389 aaKnown RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 SRPK1Q96SB4 655 aaKnown RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 TACO1Q9BSH4 297 aaKnown RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 ROPN1BQ9BZX4 212 aaPredicted RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 CRISPLD2Q9H0B8 497 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ROPN1Q9HAT0 212 aaPredicted RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 LMAN1LQ9HAT1 526 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 COLQQ9Y215 455 aaPredicted RBP9.27□□□□□ -0.93
VPS39-205ENST00000562258 EFR3BQ9Y2G0 817 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 ARL5AQ9Y689 179 aa9.27□□□□□ -0.93
VPS39-205ENST00000562258 TTC34A8MYJ7 566 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 TXNDC9O14530 226 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 PRMT5O14744 637 aaPredicted RBP9.26□□□□□ -0.93
VPS39-205ENST00000562258 CLDN7O95471 211 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 CES1P23141 567 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 ALDH9A1P49189 494 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 DBN1Q16643 649 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 AMZ1Q400G9 498 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 ANKRD20A4Q4UJ75 823 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 TRIM74Q86UV6 250 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 PARGQ86W56 976 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 RAVER1Q8IY67 606 aaKnown RBP9.26□□□□□ -0.93
VPS39-205ENST00000562258 CLDN19Q8N6F1 224 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 NKD2Q969F2 451 aaPredicted RBP9.26□□□□□ -0.93
VPS39-205ENST00000562258 KLHL29Q96CT2 875 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 QKIQ96PU8 341 aaKnown RBP eCLIP9.26□□□□□ -0.93
VPS39-205ENST00000562258 FERD3LQ96RJ6 166 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 GPR174Q9BXC1 333 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 CWH43Q9H720 699 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 FGFR1OP2Q9NVK5 253 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 SIRPGQ9P1W8 387 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 STARD13Q9Y3M8 1113 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 NBASA2RRP1 2371 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 TCRBV21S2A2A0A5A6 115 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 CPED1A4D0V7 1026 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 TMEM247A6NEH6 219 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 GLRA3O75311 464 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 LEFTY1O75610 366 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 PRAMEF12O95522 483 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 CXCL10P02778 98 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 SCNN1AP37088 669 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 GRIN2CQ14957 1233 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 FAM78AQ5JUQ0 283 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 TMEM31Q5JXX7 168 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 C22orf39Q6P5X5 142 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 ZNF852Q6ZMS4 543 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 LYSMD3Q7Z3D4 306 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 SIX5Q8N196 739 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 FAM46DQ8NEK8 389 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 CCDC124Q96CT7 223 aaKnown RBP9.26□□□□□ -0.93
VPS39-205ENST00000562258 LRGUKQ96M69 825 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 CDCA3Q99618 268 aaPredicted RBP9.26□□□□□ -0.93
VPS39-205ENST00000562258 HGH1Q9BTY7 390 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 OR2AG1Q9H205 316 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 ADA2Q9NZK5 511 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 COQ6Q9Y2Z9 468 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 NUMBLQ9Y6R0 609 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 FER1L6Q2WGJ9 1857 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 ATG13O75143 517 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 RBP1P09455 135 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 TPBGLP0DKB5 382 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 NAGLUP54802 743 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 SLC25A11Q02978 314 aaKnown RBP9.26□□□□□ -0.93
VPS39-205ENST00000562258 GRM3Q14832 879 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 MYLK3Q32MK0 819 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 EOGTQ5NDL2 527 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 SLC30A9Q6PML9 568 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 AFTPHQ6ULP2 937 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 GPSM1Q86YR5 675 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 PHYKPLQ8IUZ5 450 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 DCBLD1Q8N8Z6 715 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 SCAMP4Q969E2 229 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 AZIN2Q96A70 460 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 LRCH3Q96II8 777 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 LMAN2LQ9H0V9 348 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 GBA3Q9H227 469 aa9.26□□□□□ -0.93
VPS39-205ENST00000562258 CARS2Q9HA77 564 aaKnown RBP9.26□□□□□ -0.93
VPS39-205ENST00000562258 USP15Q9Y4E8 981 aaPredicted RBP9.26□□□□□ -0.93
VPS39-205ENST00000562258 CFAP20Q9Y6A4 193 aaKnown RBP9.26□□□□□ -0.93
VPS39-205ENST00000562258 TCRBV9S1A1TA0A576 114 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 BCLAF3A2AJT9 711 aaKnown RBP9.25□□□□□ -0.93
VPS39-205ENST00000562258 H0Y858 1186 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 GNGT2O14610 69 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 FPGTO14772 594 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 LINC01565O15544 149 aa9.25□□□□□ -0.93
VPS39-205ENST00000562258 FAM155BO75949 473 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms