RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SCYL1Q96KG9 808 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 CNDP1Q96KN2 507 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 APOL2Q9BQE5 337 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 CORO1BQ9BR76 489 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 LRRC3Q9BY71 257 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 ZMYND15Q9H091 742 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 RNF38Q9H0F5 515 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 NOD2Q9HC29 1040 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 GPAMQ9HCL2 828 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 MLXIPLQ9NP71 852 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 NPHS2Q9NP85 383 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 MAN1C1Q9NR34 630 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 OXSMQ9NWU1 459 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 THG1LQ9NWX6 298 aaKnown RBP7.54□□□□□ -1.2
VPS39-204ENST00000561818 GDE1Q9NZC3 331 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 VPS51Q9UID3 782 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 VWA7Q9Y334 891 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 RAP2CQ9Y3L5 183 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 OR51B4Q9Y5P0 310 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 RAI2Q9Y5P3 530 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 SLC30A1Q9Y6M5 507 aa7.54□□□□□ -1.2
VPS39-204ENST00000561818 PLXNA4Q9HCM2 1894 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 NYNRINQ9P2P1 1898 aaKnown RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 NUP205Q92621 2012 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 A0A0D9SEW6 157 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 A0A1W2PRU2 124 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 LINC01553A4QN01 128 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 CAPN8A6NHC0 703 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 F5H423 210 aaPredicted RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 GIPC1O14908 333 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 HOXC11O43248 304 aaPredicted RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 HTRA2O43464 458 aaPredicted RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 GREM1O60565 184 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 VPS4BO75351 444 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 PGLSO95336 258 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 HSPA4LO95757 839 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 LMNAP02545 664 aaKnown RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 RHOP08100 348 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 GSTM1P09488 218 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 DLDP09622 509 aaKnown RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 LINC00271P0C7V0 271 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 SLC35E2BP0CK96 405 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 HSPA1AP0DMV8 641 aaKnown RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 HSPA1BP0DMV9 641 aaKnown RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 ACRP10323 421 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 CYP2A6P11509 494 aaPredicted RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 TPH1P17752 444 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 BGNP21810 368 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 SLC8A1P32418 973 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 MAXP61244 160 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 ERVK-21P61565 698 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 ST8SIA6P61647 398 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 ARF5P84085 180 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 GSTM4Q03013 218 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 BST1Q10588 318 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 PDAP1Q13442 181 aaKnown RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 RCN2Q14257 317 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 PCLAFQ15004 111 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 PDGFRLQ15198 375 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 MAPRE2Q15555 327 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 CDKL4Q5MAI5 379 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 C6orf163Q5TEZ5 329 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 PLPP4Q5VZY2 271 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 TXNDC8Q6A555 127 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 CIR1Q86X95 450 aaPredicted RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 RBFAQ8N0V3 343 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 CFAP52Q8N1V2 620 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 SLC25A41Q8N5S1 370 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 MAB21L3Q8N8X9 362 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 GPATCH11Q8N954 259 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 STAG3L4Q8TBR4 150 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 SH3RF2Q8TEC5 729 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 HDAC10Q969S8 669 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 TIFAQ96CG3 184 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 ERP27Q96DN0 273 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 MAGEB10Q96LZ2 347 aaPredicted RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 PLEKHG4BQ96PX9 1271 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 PANX3Q96QZ0 392 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 AGAP2Q99490 1192 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 GPR63Q9BZJ6 419 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 DRC3Q9H069 523 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 C1orf21Q9H246 121 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 LRMDAQ9H2I8 198 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 RABEP2Q9H5N1 569 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 TFB2MQ9H5Q4 396 aaKnown RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 PIDD1Q9HB75 910 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 ZNF334Q9HCZ1 680 aaPredicted RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 MRPL40Q9NQ50 206 aaKnown RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 GKN1Q9NS71 199 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 TMEM45AQ9NWC5 275 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 SMPD4Q9NXE4 827 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 NFKBIL1Q9UBC1 381 aaPredicted RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 BCAP29Q9UHQ4 241 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 GNPTGQ9UJJ9 305 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 PPIL1Q9Y3C6 166 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 TNPO3Q9Y5L0 923 aaKnown RBP7.53□□□□□ -1.2
VPS39-204ENST00000561818 PSAT1Q9Y617 370 aa7.53□□□□□ -1.2
VPS39-204ENST00000561818 MIA3Q5JRA6 1907 aa7.52□□□□□ -1.2
VPS39-204ENST00000561818 DNAH12Q6ZR08 3092 aa7.52□□□□□ -1.21
VPS39-204ENST00000561818 A0A0G2JND7 137 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms