RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 KCTD11Q693B1 232 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 THOC7Q6I9Y2 204 aaKnown RBP16.54■□□□□ 0.24
TPM1-228ENST00000560975 ESRP1Q6NXG1 681 aaKnown RBP16.54■□□□□ 0.24
TPM1-228ENST00000560975 OTOP3Q7RTS5 596 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 FAM83AQ86UY5 434 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 NRBF2Q96F24 287 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 RHOBTB2Q9BYZ6 727 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 EML4Q9HC35 981 aaKnown RBP16.54■□□□□ 0.24
TPM1-228ENST00000560975 USP21Q9UK80 565 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 DSEQ9UL01 958 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 ZBTB42B2RXF5 422 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 UBFD1O14562 309 aaKnown RBP16.54■□□□□ 0.24
TPM1-228ENST00000560975 JRKO75564 520 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 CES1P23141 567 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 AXLP30530 894 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 SNX16P57768 344 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 IFITM3Q01628 133 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 PHKG1Q16816 387 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 IMPG1Q17R60 797 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 EFCAB12Q6NXP0 572 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 CRTC3Q6UUV7 619 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 HACD2Q6Y1H2 254 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 CYHR1Q6ZMK1 362 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 KDELC2Q7Z4H8 507 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 ITIH5Q86UX2 942 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 SEPT1Q8WYJ6 367 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 ROPN1LQ96C74 230 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 FAR2Q96K12 515 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 LTB4R2Q9NPC1 389 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 ACTR3BQ9P1U1 418 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 SLC2A6Q9UGQ3 507 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 USP22Q9UPT9 525 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 PCNTO95613 3336 aa16.54■□□□□ 0.24
TPM1-228ENST00000560975 M0QYT0 321 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 PFDN6O15212 129 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 BCAS1O75363 584 aaPredicted RBP16.53■□□□□ 0.24
TPM1-228ENST00000560975 JCHAINP01591 159 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 GPX3P22352 226 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 RFC2P35250 354 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 CDH13P55290 713 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 RABL3Q5HYI8 236 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 RBM20Q5T481 1227 aaKnown RBP16.53■□□□□ 0.24
TPM1-228ENST00000560975 LCN8Q6JVE9 175 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 ZDHHC17Q8IUH5 632 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 PDPRQ8NCN5 879 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 GABPB2Q8TAK5 448 aaPredicted RBP16.53■□□□□ 0.24
TPM1-228ENST00000560975 MAGED1Q9Y5V3 778 aaPredicted RBP16.53■□□□□ 0.24
TPM1-228ENST00000560975 MAN1A2O60476 641 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 GMNNO75496 209 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 IPO13O94829 963 aaKnown RBP16.53■□□□□ 0.24
TPM1-228ENST00000560975 MYO1DO94832 1006 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 SUPT7LO94864 414 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 CASP2P42575 452 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 SLC1A2P43004 574 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 GSSP48637 474 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 TPTEP56180 551 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 ADARB1P78563 741 aaKnown RBP16.53■□□□□ 0.24
TPM1-228ENST00000560975 SF3B4Q15427 424 aaKnown RBP eCLIP16.53■□□□□ 0.241e-9■■□□□ 12.9
TPM1-228ENST00000560975 GEN1Q17RS7 908 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 PYCR3Q53H96 274 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 IRAK1BP1Q5VVH5 260 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 LARP4Q71RC2 724 aaKnown RBP eCLIP16.53■□□□□ 0.249e-10■□□□□ 8.2
TPM1-228ENST00000560975 STRADAQ7RTN6 431 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 R3HCC1LQ7Z5L2 792 aaKnown RBP16.53■□□□□ 0.24
TPM1-228ENST00000560975 SPATA22Q8NHS9 363 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 EXT2Q93063 718 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 FUNDC2Q9BWH2 189 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 TEX13BQ9BXU2 312 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 GBA3Q9H227 469 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 AKTIPQ9H8T0 292 aa16.53■□□□□ 0.24
TPM1-228ENST00000560975 GPN2Q9H9Y4 310 aaPredicted RBP16.53■□□□□ 0.24
TPM1-228ENST00000560975 NDUFB5O43674 189 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 HUS1O60921 280 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 LDLRP01130 860 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 SLC6A2P23975 617 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 MATKP42679 507 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 CDH17Q12864 832 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 PSMD5Q16401 504 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 USP51Q70EK9 711 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 NPWQ8N729 165 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 ZFP90Q8TF47 636 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 AKT1S1Q96B36 256 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 TPK1Q9H3S4 243 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 EHD1Q9H4M9 534 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 NSMCE4AQ9NXX6 385 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 SHROOM3Q8TF72 1996 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 FXYD1O00168 92 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 CYP2C9P11712 490 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 TCEA1P23193 301 aaKnown RBP16.52■□□□□ 0.24
TPM1-228ENST00000560975 ICAM3P32942 547 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 NOS2P35228 1153 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 DNAJB13P59910 316 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 PAFAH1B3Q15102 231 aaKnown RBP16.52■□□□□ 0.24
TPM1-228ENST00000560975 INAVAQ3KP66 663 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 BTBD8Q5XKL5 378 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 ZNF470Q6ECI4 717 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 GTF2IRD2BQ6EKJ0 949 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 GTF2IRD2Q86UP8 949 aa16.52■□□□□ 0.24
TPM1-228ENST00000560975 RAVER1Q8IY67 606 aaKnown RBP16.52■□□□□ 0.24
TPM1-228ENST00000560975 C19orf60Q96EN9 201 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms