RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 C1QTNF2Q9BXJ5 285 aa21.83■■□□□ 1.09
SNX1-210ENST00000560260 CA5BQ9Y2D0 317 aa21.83■■□□□ 1.09
SNX1-210ENST00000560260 C1SP09871 688 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 HLA-DPA1P20036 260 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 CD27P26842 260 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 PEAR1Q5VY43 1037 aaPredicted RBP21.82■■□□□ 1.08
SNX1-210ENST00000560260 KDM7AQ6ZMT4 941 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 RFLNAQ6ZTI6 216 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 HSD11B1LQ7Z5J1 315 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 CBARPQ8N350 705 aaPredicted RBP21.82■■□□□ 1.08
SNX1-210ENST00000560260 KIF18AQ8NI77 898 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 GRK7Q8WTQ7 553 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 LOXL4Q96JB6 756 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 SLC6A18Q96N87 628 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 KRT12Q99456 494 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 SEMA4AQ9H3S1 761 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 LRRC40Q9H9A6 602 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 PILRBQ9UKJ0 227 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 RAB23Q9ULC3 237 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 GON4LQ3T8J9 2241 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 SCN8AQ9UQD0 1980 aa21.82■■□□□ 1.08
SNX1-210ENST00000560260 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.81■■□□□ 1.08
SNX1-210ENST00000560260 TCRBV7S3A2A0A539 114 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 GOLGA8CPA6NN73 597 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 AURKAO14965 403 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 SLC31A1O15431 190 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 FGF1P05230 155 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 ELFN1P0C7U0 828 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 CREB5Q02930 508 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 GPS1Q13098 491 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 MSLNQ13421 630 aaPredicted RBP21.81■■□□□ 1.08
SNX1-210ENST00000560260 WHAMMP3Q1A5X7 153 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 WDR45BQ5MNZ6 344 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 LYSMD3Q7Z3D4 306 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 RGL4Q8IZJ4 473 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 ZCCHC9Q8N567 271 aaKnown RBP21.81■■□□□ 1.08
SNX1-210ENST00000560260 PIGKQ92643 395 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 EID2BQ96D98 161 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 COQ10AQ96MF6 247 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 KLF6Q99612 283 aaPredicted RBP21.81■■□□□ 1.08
SNX1-210ENST00000560260 SLC17A9Q9BYT1 436 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 MIR1-1HGQ9H1L0 117 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 PIH1D1Q9NWS0 290 aaKnown RBP21.81■■□□□ 1.08
SNX1-210ENST00000560260 ZNF711Q9Y462 761 aa21.81■■□□□ 1.08
SNX1-210ENST00000560260 TM7SF2O76062 418 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 SUN1O94901 812 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 CLDN7O95471 211 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 GAS8O95995 478 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 PAK4O96013 591 aaPredicted RBP21.8■■□□□ 1.08
SNX1-210ENST00000560260 LMNAP02545 664 aaKnown RBP21.8■■□□□ 1.08
SNX1-210ENST00000560260 GRIA1P42261 906 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 STC1P52823 247 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 TERF1P54274 439 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 BASP1P80723 227 aaKnown RBP21.8■■□□□ 1.08
SNX1-210ENST00000560260 MRPS25P82663 173 aaKnown RBP21.8■■□□□ 1.08
SNX1-210ENST00000560260 PTK6Q13882 451 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 CCDC6Q16204 474 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 SETMARQ53H47 684 aaPredicted RBP21.8■■□□□ 1.08
SNX1-210ENST00000560260 DENND2CQ68D51 928 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 LAYNQ6UX15 382 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 JAMLQ86YT9 394 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 NDUFAF2Q8N183 169 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 TP53I13Q8NBR0 393 aaPredicted RBP21.8■■□□□ 1.08
SNX1-210ENST00000560260 TMEM145Q8NBT3 493 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 TRIM51Q9BSJ1 452 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 ARRDC1-AS1Q9H2J1 176 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 SMOC1Q9H4F8 434 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 SHOC2Q9UQ13 582 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 C1orf232A0A0U1RR37 186 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 GOLGA6CA6NDK9 693 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 GOLGA6BA6NDN3 693 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 TTI1O43156 1089 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 ZNF500O60304 480 aaPredicted RBP21.8■■□□□ 1.08
SNX1-210ENST00000560260 RECQL5O94762 991 aaPredicted RBP21.8■■□□□ 1.08
SNX1-210ENST00000560260 APRTP07741 180 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 GOLGA6DP0CG33 693 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 MPLP40238 635 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 DR1Q01658 176 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 PTSQ03393 145 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 CKAP4Q07065 602 aaKnown RBP21.8■■□□□ 1.08
SNX1-210ENST00000560260 ANKRD22Q5VYY1 191 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 NAPEPLDQ6IQ20 393 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 C4orf22Q6V702 233 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 ASCL5Q7RTU5 278 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 TTC30BQ8N4P2 665 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 ASB12Q8WXK4 309 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 ARNT2Q9HBZ2 717 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 MAGEE1Q9HCI5 957 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 TM9SF3Q9HD45 589 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 EIF2B3Q9NR50 452 aaKnown RBP21.8■■□□□ 1.08
SNX1-210ENST00000560260 GOLGA6AQ9NYA3 693 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 TPX2Q9ULW0 747 aaKnown RBP21.8■■□□□ 1.08
SNX1-210ENST00000560260 DMTF1Q9Y222 760 aa21.8■■□□□ 1.08
SNX1-210ENST00000560260 OTOGLQ3ZCN5 2332 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 ERI2A8K979 691 aaKnown RBP21.79■■□□□ 1.08
SNX1-210ENST00000560260 ESPNB1AK53 854 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 PATE3B3GLJ2 98 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 TMEM63AO94886 807 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 SLC4A1P02730 911 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 RETP07949 1114 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms