RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CPP00450 1065 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 GP1BAP07359 652 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 MMP13P45452 471 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 PEX5P50542 639 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 GBE1Q04446 702 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 MTM1Q13496 603 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 ACOX1Q15067 660 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 ANKRD20A8PQ5CZ79 823 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 CACTIN-AS1Q8N1I8 211 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 PAF1Q8N7H5 531 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 ATXN7L3BQ96GX2 97 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 WDR92Q96MX6 357 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 CCDC3Q9BQI4 270 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 SUDS3Q9H7L9 328 aaPredicted RBP17.78■□□□□ 0.44
HDDC3-205ENST00000559898 SPTLC3Q9NUV7 552 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 KLQ9UEF7 1012 aa17.78■□□□□ 0.44
HDDC3-205ENST00000559898 ARHGEF17Q96PE2 2063 aaPredicted RBP17.77■□□□□ 0.44
HDDC3-205ENST00000559898 ETV3P41162 512 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 DUSP3P51452 185 aaPredicted RBP17.77■□□□□ 0.44
HDDC3-205ENST00000559898 RENBPP51606 427 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 DSC2Q02487 901 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 GALNT2Q10471 571 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 PAFAH1B3Q15102 231 aaKnown RBP17.77■□□□□ 0.44
HDDC3-205ENST00000559898 SLC18A3Q16572 532 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 SOWAHCQ53LP3 525 aaPredicted RBP17.77■□□□□ 0.44
HDDC3-205ENST00000559898 PNCKQ6P2M8 343 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 B4GALNT4Q76KP1 1039 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 CBARPQ8N350 705 aaPredicted RBP17.77■□□□□ 0.44
HDDC3-205ENST00000559898 TEX26Q8N6G2 289 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 PIH1D2Q8WWB5 315 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 RAPGEF5Q92565 580 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 NAF1Q96HR8 494 aaKnown RBP17.77■□□□□ 0.44
HDDC3-205ENST00000559898 DNAJC7Q99615 494 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 TMEM168Q9H0V1 697 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 ABCG4Q9H172 646 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 CD84Q9UIB8 345 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 PADI4Q9UM07 663 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 ENTPD2Q9Y5L3 495 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 ST14Q9Y5Y6 855 aa17.77■□□□□ 0.44
HDDC3-205ENST00000559898 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.76■□□□□ 0.43
HDDC3-205ENST00000559898 TOR1BO14657 336 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 HEXIM1O94992 359 aaKnown RBP17.76■□□□□ 0.43
HDDC3-205ENST00000559898 RASGRP1O95267 797 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 PGLSO95336 258 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 CTSEP14091 401 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 VIPR1P32241 457 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 TRIM23P36406 574 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 GARSP41250 739 aaKnown RBP17.76■□□□□ 0.43
HDDC3-205ENST00000559898 KIAA1024LP59773 190 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 GABREP78334 506 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 NIPAL4Q0D2K0 466 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 CCDC173Q0VFZ6 552 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 ISXQ2M1V0 245 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 MARC1Q5VT66 337 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 CCDC74AQ96AQ1 378 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 PRR11Q96HE9 360 aaPredicted RBP17.76■□□□□ 0.43
HDDC3-205ENST00000559898 TBATAQ96M53 351 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 DEPDC7Q96QD5 511 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 SEMA3CQ99985 751 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 SYNDIG1Q9H7V2 258 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 USP29Q9HBJ7 922 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 GPR34Q9UPC5 381 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 SATB2Q9UPW6 733 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 HYOU1Q9Y4L1 999 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.76■□□□□ 0.43
HDDC3-205ENST00000559898 IGSF10Q6WRI0 2623 aa17.76■□□□□ 0.43
HDDC3-205ENST00000559898 CFAP69A5D8W1 941 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 AGRPO00253 132 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 FZD6O60353 706 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 SOCS5O75159 536 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 HLA-DQB2P05538 268 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 POLD2P49005 469 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 MESDQ14696 234 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 TBC1D25Q3MII6 688 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 C3orf38Q5JPI3 329 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 SPECC1LQ69YQ0 1117 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 ESRP1Q6NXG1 681 aaKnown RBP17.75■□□□□ 0.43
HDDC3-205ENST00000559898 Q6ZVL8 140 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 B3GNT8Q7Z7M8 397 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 VSTM4Q8IW00 320 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 KCTD6Q8NC69 237 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 OR56A4Q8NGH8 313 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 MAML1Q92585 1016 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 FAF2Q96CS3 445 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 NUS1Q96E22 293 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 RBM15Q96T37 977 aaKnown RBP eCLIP17.75■□□□□ 0.43
HDDC3-205ENST00000559898 AGAP2Q99490 1192 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 CYP4F12Q9HCS2 524 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 MOSPD1Q9UJG1 213 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 PLEKHM1Q9Y4G2 1056 aa17.75■□□□□ 0.43
HDDC3-205ENST00000559898 A0A1W2PQM1 296 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 C3orf70A6NLC5 250 aaPredicted RBP17.74■□□□□ 0.43
HDDC3-205ENST00000559898 SOD1P00441 154 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 PRLP01236 227 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 TNFP01375 233 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 H2AFZP0C0S5 128 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 HTR1BP28222 390 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 SERPINB6P35237 376 aa17.74■□□□□ 0.43
HDDC3-205ENST00000559898 POLR2LP62875 67 aaKnown RBP17.74■□□□□ 0.43
HDDC3-205ENST00000559898 CCL7P80098 99 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms