RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 NUDT21O43809 227 aaKnown RBP13.14□□□□□ -0.31
TPM1-220ENST00000559556 PALMO75781 387 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 POLR2LP62875 67 aaKnown RBP13.14□□□□□ -0.31
TPM1-220ENST00000559556 NSUN2Q08J23 767 aaKnown RBP eCLIP13.14□□□□□ -0.31
TPM1-220ENST00000559556 RFTN1Q14699 578 aaPredicted RBP13.14□□□□□ -0.31
TPM1-220ENST00000559556 CA9Q16790 459 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 SPECC1LQ69YQ0 1117 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 ACAD10Q6JQN1 1059 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 CYP4V2Q6ZWL3 525 aaPredicted RBP13.14□□□□□ -0.31
TPM1-220ENST00000559556 TAF8Q7Z7C8 310 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 SLITRK4Q8IW52 837 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 SFTPA2Q8IWL1 248 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 FAM46DQ8NEK8 389 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 PCMTD1Q96MG8 357 aaPredicted RBP13.14□□□□□ -0.31
TPM1-220ENST00000559556 PEBP4Q96S96 227 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 SYT11Q9BT88 431 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 SNRNP25Q9BV90 132 aaKnown RBP13.14□□□□□ -0.31
TPM1-220ENST00000559556 CINPQ9BW66 212 aaPredicted RBP13.14□□□□□ -0.31
TPM1-220ENST00000559556 TMEM168Q9H0V1 697 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 DHX35Q9H5Z1 703 aaKnown RBP13.14□□□□□ -0.31
TPM1-220ENST00000559556 SP110Q9HB58 689 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 MRPL40Q9NQ50 206 aaKnown RBP13.14□□□□□ -0.31
TPM1-220ENST00000559556 PISDQ9UG56 409 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 LOXL2Q9Y4K0 774 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 RNF215Q9Y6U7 377 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 CENPEQ02224 2701 aa13.14□□□□□ -0.31
TPM1-220ENST00000559556 TEX15Q9BXT5 2789 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 SEC16AO15027 2179 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 MED13Q9UHV7 2174 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 PRSS38A1L453 326 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 B4DGG1 531 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 ITGB2P05107 769 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 FERP16591 822 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 ITIH1P19827 911 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 AP1S1P61966 158 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 UBXN1Q04323 297 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 BCL2L1Q07817 233 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 IL10RBQ08334 325 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 TGIF1Q15583 401 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 TSR1Q2NL82 804 aaKnown RBP13.13□□□□□ -0.31
TPM1-220ENST00000559556 ERMARDQ5T6L9 678 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 PPP1R2P3Q6NXS1 205 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 XKR5Q6UX68 686 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 RFX8Q6ZV50 586 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 APTXQ7Z2E3 356 aaKnown RBP13.13□□□□□ -0.31
TPM1-220ENST00000559556 TMPRSS9Q7Z410 1059 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 PELI3Q8N2H9 469 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 ARFGAP1Q8N6T3 406 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 NPWQ8N729 165 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 Q8N9G6 341 aaPredicted RBP13.13□□□□□ -0.31
TPM1-220ENST00000559556 ANKRD20A12PQ8NF67 263 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 COL26A1Q96A83 441 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 SGF29Q96ES7 293 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 NSMCE3Q96MG7 304 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 PSKH2Q96QS6 385 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 KCTD15Q96SI1 283 aaPredicted RBP13.13□□□□□ -0.31
TPM1-220ENST00000559556 LGR4Q9BXB1 951 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 WDR26Q9H7D7 661 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 CYP4F12Q9HCS2 524 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 LRIT1Q9P2V4 623 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 SPTBP11277 2137 aa13.13□□□□□ -0.31
TPM1-220ENST00000559556 NBPF19A0A087WUL8 3843 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 PRAMEF33A0A0G2JMD5 474 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 LRRC10BA6NIK2 292 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.12□□□□□ -0.31
TPM1-220ENST00000559556 ATMINO43313 823 aaPredicted RBP13.12□□□□□ -0.31
TPM1-220ENST00000559556 SLC28A2O43868 658 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 PRAMEF10O60809 474 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 SOCS5O75159 536 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 CCDC172P0C7W6 258 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 MYCLP1P12525 358 aaPredicted RBP13.12□□□□□ -0.31
TPM1-220ENST00000559556 ERCC2P18074 760 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 PSMA2P25787 234 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 ETV5P41161 510 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 MYL5Q02045 173 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 SRSF6Q13247 344 aaKnown RBP13.12□□□□□ -0.31
TPM1-220ENST00000559556 MAMLD1Q13495 774 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 ARHGEF7Q14155 803 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 NR1D2Q14995 579 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 LINC00303Q3SY05 128 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 PLEKHA7Q6IQ23 1121 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 PNCKQ6P2M8 343 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 ARHGAP36Q6ZRI8 547 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 CLEC17AQ6ZS10 378 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 USP53Q70EK8 1073 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 ZNF438Q7Z4V0 828 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 IRF2BP2Q7Z5L9 587 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 C17orf82Q86X59 251 aaPredicted RBP13.12□□□□□ -0.31
TPM1-220ENST00000559556 DTX1Q86Y01 620 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 PSTKQ8IV42 348 aaKnown RBP13.12□□□□□ -0.31
TPM1-220ENST00000559556 EXD3Q8N9H8 876 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 CCL4L1Q8NHW4 92 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 KIAA1524Q8TCG1 905 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 GPBAR1Q8TDU6 330 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 COQ10AQ96MF6 247 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 CMKLR1Q99788 373 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 B3GNT4Q9C0J1 378 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 DPEP2Q9H4A9 486 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 CLMPQ9H6B4 373 aa13.12□□□□□ -0.31
TPM1-220ENST00000559556 LMBRD1Q9NUN5 540 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms