RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 NBL1P41271 181 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 ADPRHP54922 357 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 RPL6Q02878 288 aaKnown RBP9.26□□□□□ -0.93
LDLR-210ENST00000559340 GALNT3Q14435 633 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 SPARCL1Q14515 664 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 KCNJ11Q14654 390 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 ELF2Q15723 593 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 SETMARQ53H47 684 aaPredicted RBP9.26□□□□□ -0.93
LDLR-210ENST00000559340 DNAJC21Q5F1R6 531 aaKnown RBP9.26□□□□□ -0.93
LDLR-210ENST00000559340 WDR45BQ5MNZ6 344 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 KIAA0895LQ68EN5 471 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 DUPD1Q68J44 220 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 LRRC8BQ6P9F7 803 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 NLRP9Q7RTR0 991 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 PRUNE1Q86TP1 453 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 TRIM69Q86WT6 500 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 HORMAD1Q86X24 394 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 IFT20Q8IY31 132 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 MAML2Q8IZL2 1156 aaPredicted RBP9.26□□□□□ -0.93
LDLR-210ENST00000559340 FAM174AQ8TBP5 190 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 BRSK1Q8TDC3 778 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 RLN3Q8WXF3 142 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 CPT1BQ92523 772 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 NELL1Q92832 810 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 NSMCE3Q96MG7 304 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 C19orf43Q9BQ61 176 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 TRIM51Q9BSJ1 452 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 LRRC1Q9BTT6 524 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 GPR174Q9BXC1 333 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 FOXP3Q9BZS1 431 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 TSPYL1Q9H0U9 437 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 CDH19Q9H159 772 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 ZFYVE1Q9HBF4 777 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 CASS4Q9NQ75 786 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 PKD2L2Q9NZM6 624 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 B4GALT6Q9UBX8 382 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 RAB23Q9ULC3 237 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 SHOC2Q9UQ13 582 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 DMTF1Q9Y222 760 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 TDRD6O60522 2096 aaKnown RBP9.25□□□□□ -0.93
LDLR-210ENST00000559340 PIKFYVEQ9Y2I7 2098 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 C1orf232A0A0U1RR37 186 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 HEATR9A2RTY3 570 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 SDR42E2A6NKP2 422 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 PLK4O00444 970 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 SEC31AO94979 1220 aaKnown RBP9.25□□□□□ -0.93
LDLR-210ENST00000559340 HEXIM1O94992 359 aaKnown RBP9.25□□□□□ -0.93
LDLR-210ENST00000559340 PYGLP06737 847 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 ATXN1LP0C7T5 689 aaKnown RBP9.25□□□□□ -0.93
LDLR-210ENST00000559340 LPOP22079 712 aaPredicted RBP9.25□□□□□ -0.93
LDLR-210ENST00000559340 ADRA1DP25100 572 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 ACSL1P33121 698 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 MMP12P39900 470 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 ABL2P42684 1182 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 ARL4CP56559 192 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 IHHQ14623 411 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 ACOX1Q15067 660 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 TAF1AQ15573 450 aaPredicted RBP9.25□□□□□ -0.93
LDLR-210ENST00000559340 RNASEH2BQ5TBB1 312 aaKnown RBP9.25□□□□□ -0.93
LDLR-210ENST00000559340 LIPIQ6XZB0 460 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 ZSWIM9Q86XI8 627 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 NRSN1Q8IZ57 195 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 PDIK1LQ8N165 341 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 NAT8LQ8N9F0 302 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 ZBTB44Q8NCP5 570 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 PPHLN1Q8NEY8 458 aaKnown RBP9.25□□□□□ -0.93
LDLR-210ENST00000559340 OR52K1Q8NGK4 314 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 BLOC1S5Q8TDH9 187 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 PTCD2Q8WV60 388 aaKnown RBP9.25□□□□□ -0.93
LDLR-210ENST00000559340 VOPP1Q96AW1 172 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 SKA1Q96BD8 255 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 RANBP9Q96S59 729 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 APOL2Q9BQE5 337 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 GORASP1Q9BQQ3 440 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 NAT9Q9BTE0 207 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 TRIM31Q9BZY9 425 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 IL22Q9GZX6 179 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 DUSP15Q9H1R2 295 aaPredicted RBP9.25□□□□□ -0.93
LDLR-210ENST00000559340 SEMA4AQ9H3S1 761 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 SAMD15Q9P1V8 674 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 MTRF1LQ9UGC7 380 aaKnown RBP9.25□□□□□ -0.93
LDLR-210ENST00000559340 SNX24Q9Y343 169 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 PKP3Q9Y446 797 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 ZNF711Q9Y462 761 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 MYLKQ15746 1914 aa9.25□□□□□ -0.93
LDLR-210ENST00000559340 CACNA1EQ15878 2313 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 A0A1W2PQU0 124 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 PRR23AA6NEV1 266 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 METTL12A8MUP2 240 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 MEI4A8MW99 385 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 TOR1BO14657 336 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 WNT9AO14904 365 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 EIF3HO15372 352 aaKnown RBP eCLIP9.24□□□□□ -0.93
LDLR-210ENST00000559340 STX7O15400 261 aaKnown RBP9.24□□□□□ -0.93
LDLR-210ENST00000559340 MAGEC1O60732 1142 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 MMP20O60882 483 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 LILRB5O75023 590 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 USP12O75317 370 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 FSBPO95073 299 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 ALPIP09923 528 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms