RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 GRIA3P42263 894 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 TBCELQ5QJ74 424 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 GJC2Q5T442 439 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-232ENST00000557487 TMTC4Q5T4D3 741 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 FAM35AQ86V20 835 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 CLYBLQ8N0X4 340 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 SMYD1Q8NB12 490 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 PNPT1Q8TCS8 783 aaKnown RBP16.35■□□□□ 0.21
SHMT2-232ENST00000557487 CANT1Q8WVQ1 401 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 SEPT8Q92599 483 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 SGF29Q96ES7 293 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 VPS50Q96JG6 964 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 ADI1Q9BV57 179 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 FSD1LQ9BXM9 530 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 GSTO2Q9H4Y5 243 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 CATSPERBQ9H7T0 1116 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 ARNT2Q9HBZ2 717 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 TMEM9Q9P0T7 183 aa16.35■□□□□ 0.21
SHMT2-232ENST00000557487 SNAP91O60641 907 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 MMP3P08254 477 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 FGF4P08620 206 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 GPX3P22352 226 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 SOX4Q06945 474 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-232ENST00000557487 MERTKQ12866 999 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 SPIDRQ14159 915 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 ATP6AP1Q15904 470 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 SLC36A3Q495N2 470 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 WSCD1Q658N2 575 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 RANBP10Q6VN20 620 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 PATL1Q86TB9 770 aaKnown RBP16.34■□□□□ 0.21
SHMT2-232ENST00000557487 CLVS1Q8IUQ0 354 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-232ENST00000557487 SPATA22Q8NHS9 363 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 C19orf60Q96EN9 201 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 SMOQ99835 787 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 TUBA1CQ9BQE3 449 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 FNIP2Q9P278 1114 aa16.34■□□□□ 0.21
SHMT2-232ENST00000557487 CCDC78A2IDD5 438 aa16.33■□□□□ 0.21
SHMT2-232ENST00000557487 VPS4BO75351 444 aa16.33■□□□□ 0.21
SHMT2-232ENST00000557487 RASAL1O95294 804 aa16.33■□□□□ 0.21
SHMT2-232ENST00000557487 MATN4O95460 622 aa16.33■□□□□ 0.21
SHMT2-232ENST00000557487 CKMT2P17540 419 aa16.33■□□□□ 0.21
SHMT2-232ENST00000557487 BRMS1LQ5PSV4 323 aa16.33■□□□□ 0.21
SHMT2-232ENST00000557487 SPRED1Q7Z699 444 aa16.33■□□□□ 0.21
SHMT2-232ENST00000557487 PTAR1Q7Z6K3 402 aaPredicted RBP16.33■□□□□ 0.21
SHMT2-232ENST00000557487 SPATA6LQ8N4H0 392 aa16.33■□□□□ 0.21
SHMT2-232ENST00000557487 TBC1D23Q9NUY8 699 aa16.33■□□□□ 0.21
SHMT2-232ENST00000557487 GINS2Q9Y248 185 aa16.33■□□□□ 0.21
SHMT2-232ENST00000557487 FIS1Q9Y3D6 152 aa16.33■□□□□ 0.21
SHMT2-232ENST00000557487 TANC1Q9C0D5 1861 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 COL4A4P53420 1690 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-232ENST00000557487 hCG_2014768A0A024R1R8 64 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 TYW5A2RUC4 315 aaKnown RBP16.33■□□□□ 0.2
SHMT2-232ENST00000557487 NEMP2A6NFY4 417 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 HNRNPCP07910 306 aaKnown RBP eCLIP16.33■□□□□ 0.2
SHMT2-232ENST00000557487 USP17L7P0C7H9 530 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 UMPSP11172 480 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 ATP6V1B2P21281 511 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 DCKP27707 260 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 PLOD1Q02809 727 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-232ENST00000557487 PPP1R3AQ16821 1122 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 ZNF678Q5SXM1 525 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 ABRAXAS1Q6UWZ7 409 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 ANKRD23Q86SG2 305 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 MIER2Q8N344 545 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 ZNF786Q8N393 782 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 CBR4Q8N4T8 237 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 LEMD2Q8NC56 503 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 USP33Q8TEY7 942 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 BORCS5Q969J3 196 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 ABTB1Q969K4 478 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-232ENST00000557487 SMARCD1Q96GM5 515 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 CELF6Q96J87 481 aaKnown RBP16.33■□□□□ 0.2
SHMT2-232ENST00000557487 MYRFLQ96LU7 910 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 OSMRQ99650 979 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 FAM49AQ9H0Q0 323 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-232ENST00000557487 CYP4F12Q9HCS2 524 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 PALMDQ9NP74 551 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 CRTAC1Q9NQ79 661 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 SMOXQ9NWM0 555 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 KLK14Q9P0G3 267 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 CDH9Q9ULB4 789 aa16.33■□□□□ 0.2
SHMT2-232ENST00000557487 PIN4Q9Y237 131 aaKnown RBP16.33■□□□□ 0.2
SHMT2-232ENST00000557487 A0A0J9YYE9 177 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 TRIM64BA6NI03 449 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 DFFAO00273 331 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 ANGPT2O15123 496 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 MAFKO60675 156 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 WISP3O95389 354 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-232ENST00000557487 MT-CYBP00156 380 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-232ENST00000557487 MAGEA8P43361 318 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 MRPL19P49406 292 aaKnown RBP16.32■□□□□ 0.2
SHMT2-232ENST00000557487 PGGT1BP53609 377 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 NAA20P61599 178 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 GRIK2Q13002 908 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 FUNDC1Q8IVP5 155 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 ARHGAP12Q8IWW6 846 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 C12orf43Q96C57 262 aaKnown RBP16.32■□□□□ 0.2
SHMT2-232ENST00000557487 PLEKHG4BQ96PX9 1271 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 OLFM1Q99784 485 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 TRIM54Q9BYV2 358 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms