RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 PRDM15P57071 1507 aaPredicted RBP4.82□□□□□ -1.64
PRPF39-212ENST00000557477 MAP3K1Q13233 1512 aa4.82□□□□□ -1.64
PRPF39-212ENST00000557477 CFAP65Q6ZU64 1925 aaKnown RBP4.82□□□□□ -1.64
PRPF39-212ENST00000557477 AFF2P51816 1311 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 USP17L23D6RBM5 183 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 PTGES3LE9PB15 166 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 MDM4O15151 490 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 BCAT2O15382 392 aaPredicted RBP4.81□□□□□ -1.64
PRPF39-212ENST00000557477 MT-CYBP00156 380 aaPredicted RBP4.81□□□□□ -1.64
PRPF39-212ENST00000557477 PCNAP12004 261 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 ALOX12P18054 663 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 CDAP32320 146 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 AVPR1AP37288 418 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 GARSP41250 739 aaKnown RBP4.81□□□□□ -1.64
PRPF39-212ENST00000557477 GABRB2P47870 512 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 NLRP5P59047 1200 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 MC1RQ01726 317 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 CREB5Q02930 508 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 GOLGA8DPQ0D2H9 430 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 CSTF3Q12996 717 aaKnown RBP4.81□□□□□ -1.64
PRPF39-212ENST00000557477 PLEKHO1Q53GL0 409 aaPredicted RBP4.81□□□□□ -1.64
PRPF39-212ENST00000557477 MTX3Q5HYI7 312 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 EPHA10Q5JZY3 1008 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 PRAMEF19Q5SWL8 479 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 HEPHL1Q6MZM0 1159 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 CPLX2Q6PUV4 134 aaKnown RBP4.81□□□□□ -1.64
PRPF39-212ENST00000557477 SHC4Q6S5L8 630 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 LCTLQ6UWM7 567 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 PIP4P1Q86T03 277 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 DENND6AQ8IWF6 608 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 SCFD2Q8WU76 684 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 TMEM174Q8WUU8 243 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 ARHGEF2Q92974 986 aaKnown RBP4.81□□□□□ -1.64
PRPF39-212ENST00000557477 TMEM18Q96B42 140 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 MAP7D2Q96T17 732 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 CDT1Q9H211 546 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 KIF9Q9HAQ2 790 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 NRIP3Q9NQ35 241 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 TRNAU1APQ9NX07 287 aaKnown RBP4.81□□□□□ -1.64
PRPF39-212ENST00000557477 PTGFRNQ9P2B2 879 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 HEY2Q9UBP5 337 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 NDRG3Q9UGV2 375 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 RABGAP1Q9Y3P9 1069 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 LSM4Q9Y4Z0 139 aaKnown RBP4.81□□□□□ -1.64
PRPF39-212ENST00000557477 A3GALT2U3KPV4 340 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 LRP6O75581 1613 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 XIRP1Q702N8 1843 aaKnown RBP4.81□□□□□ -1.64
PRPF39-212ENST00000557477 ARHGAP23Q9P227 1491 aa4.81□□□□□ -1.64
PRPF39-212ENST00000557477 MYOM3Q5VTT5 1437 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 ERBINQ96RT1 1412 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 KDM5AP29375 1690 aaKnown RBP4.8□□□□□ -1.64
PRPF39-212ENST00000557477 MROH1Q8NDA8 1641 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 NWD1Q149M9 1564 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 MAST1Q9Y2H9 1570 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 TMEM272A0A1B0GTI8 110 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 VILLO15195 856 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 SEC14L5O43304 696 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 HNRNPCL1O60812 293 aaKnown RBP4.8□□□□□ -1.64
PRPF39-212ENST00000557477 MMP3P08254 477 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 MYZAPP0CAP1 466 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 TFPIP10646 304 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 IL7RP16871 459 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 CHRNB2P17787 502 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 ACTN2P35609 894 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 F2RL1P55085 397 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 CDH12P55289 794 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 FAM27E3Q08E93 113 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 CUL4AQ13619 759 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 KCTD2Q14681 263 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 LPIN1Q14693 890 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 EZH2Q15910 746 aaKnown RBP4.8□□□□□ -1.64
PRPF39-212ENST00000557477 SRSF7Q16629 238 aaKnown RBP eCLIP4.8□□□□□ -1.64
PRPF39-212ENST00000557477 ODF3L2Q3SX64 289 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 KLHL35Q6PF15 583 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 FBXO46Q6PJ61 603 aaPredicted RBP4.8□□□□□ -1.64
PRPF39-212ENST00000557477 QSOX2Q6ZRP7 698 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 BRINP3Q76B58 766 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 SZRD1Q7Z422 152 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 ARHGAP12Q8IWW6 846 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 SLC35F3Q8IY50 421 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 RBFAQ8N0V3 343 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 PARP16Q8N5Y8 322 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 ENGASEQ8NFI3 743 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 NEK9Q8TD19 979 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 GPT2Q8TD30 523 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 NSUN4Q96CB9 384 aaKnown RBP4.8□□□□□ -1.64
PRPF39-212ENST00000557477 FAM120BQ96EK7 910 aaKnown RBP4.8□□□□□ -1.64
PRPF39-212ENST00000557477 ZNF333Q96JL9 665 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 ZFYVE19Q96K21 471 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 NUDT16L1Q9BRJ7 211 aaKnown RBP4.8□□□□□ -1.64
PRPF39-212ENST00000557477 CCDC68Q9H2F9 335 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 SYNCQ9H7C4 482 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 DDX4Q9NQI0 724 aaKnown RBP4.8□□□□□ -1.64
PRPF39-212ENST00000557477 ASAH2Q9NR71 780 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 ZNF215Q9UL58 517 aaPredicted RBP4.8□□□□□ -1.64
PRPF39-212ENST00000557477 FGD6Q6ZV73 1430 aa4.8□□□□□ -1.64
PRPF39-212ENST00000557477 COL16A1Q07092 1604 aaPredicted RBP4.79□□□□□ -1.64
PRPF39-212ENST00000557477 hCG_1807616A0A1W2PRN6 198 aa4.79□□□□□ -1.64
PRPF39-212ENST00000557477 FRMD3A2A2Y4 597 aa4.79□□□□□ -1.64
PRPF39-212ENST00000557477 NDUFB8O95169 186 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms