RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 NLKQ9UBE8 527 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.22□□□□□ -1.89
SCFD1-218ENST00000556256 FBXO40Q9UH90 709 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 DNAJC16Q9Y2G8 782 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 DERAQ9Y315 318 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 RNF215Q9Y6U7 377 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 RRN3P2A6NIE6 340 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 NPHP1O15259 732 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 HNRNPRO43390 633 aaKnown RBP3.21□□□□□ -1.9
SCFD1-218ENST00000556256 KRT38O76015 456 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 CBX6O95503 412 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 CDH1P12830 882 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 SP100P23497 879 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-218ENST00000556256 MAPK9P45984 424 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 LUMP51884 338 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-218ENST00000556256 TLE2Q04725 743 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 SLC20A2Q08357 652 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 AMZ1Q400G9 498 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 ANKRD45Q5TZF3 282 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 IRAK1BP1Q5VVH5 260 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 FAM122CQ6P4D5 195 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 STXBP4Q6ZWJ1 553 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 SHFQ7M4L6 423 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 MON1AQ86VX9 555 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 TMTC1Q8IUR5 882 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 DENND6AQ8IWF6 608 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 TMEM57Q8N5G2 664 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 USP38Q8NB14 1042 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 GOLGA1Q92805 767 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 ZNF524Q96C55 264 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 ZNF414Q96IQ9 312 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 COG8Q96MW5 612 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 PIGSQ96S52 555 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 CHODLQ9H9P2 273 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 PLEKHA2Q9HB19 425 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 ZNF69Q9UC07 566 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 PSAT1Q9Y617 370 aa3.21□□□□□ -1.9
SCFD1-218ENST00000556256 STX16-NPEPL1H3BU86 382 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 STX16O14662 325 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 HOXC11O43248 304 aaPredicted RBP3.2□□□□□ -1.9
SCFD1-218ENST00000556256 STRNO43815 780 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 ZIC3O60481 467 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 PYGLP06737 847 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 CSF1P09603 554 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 PATE4P0C8F1 98 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 ACP5P13686 325 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 HLA-DOBP13765 273 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 CHN1P15882 459 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 CTPS1P17812 591 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 RXRAP19793 462 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 PIGAP37287 484 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 PNPLA4P41247 253 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 RBM5P52756 815 aaKnown RBP eCLIP3.2□□□□□ -1.9
SCFD1-218ENST00000556256 RELQ04864 619 aaPredicted RBP3.2□□□□□ -1.9
SCFD1-218ENST00000556256 CHRNDQ07001 517 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 PDCLQ13371 301 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 TAF12Q16514 161 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 CTXN3Q4LDR2 81 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 MMS22LQ6ZRQ5 1243 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 OR10V1Q8NGI7 309 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 CEP70Q8NHQ1 597 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 REEP2Q9BRK0 252 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 CLPBQ9H078 707 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 CSTL1Q9H114 145 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 RPS10P5Q9NQ39 176 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 WASH6PQ9NQA3 447 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 PAK5Q9P286 719 aa3.2□□□□□ -1.9
SCFD1-218ENST00000556256 VWA3AA6NCI4 1184 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 OR6C68A6NDL8 312 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 SEPT4O43236 478 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 AGR2O95994 175 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 POLBP06746 335 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 ARSAP15289 507 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 CNTFP26441 200 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 VAMP2P63027 116 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 UBE3AQ05086 875 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 SLC18A2Q05940 514 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 THOC5Q13769 683 aaKnown RBP3.19□□□□□ -1.9
SCFD1-218ENST00000556256 ANKRD1Q15327 319 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 ATP13A5Q4VNC0 1218 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 LRRC24Q50LG9 513 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 PAPPA-AS1Q5QFB9 102 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 INTS11Q5TA45 600 aaKnown RBP3.19□□□□□ -1.9
SCFD1-218ENST00000556256 CEACAM20Q6UY09 585 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 FSIP1Q8NA03 581 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 LINS1Q8NG48 757 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 RNF183Q96D59 192 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 MAELQ96JY0 434 aaKnown RBP3.19□□□□□ -1.9
SCFD1-218ENST00000556256 YME1L1Q96TA2 773 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 NOD2Q9HC29 1040 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 ANKRD10Q9NXR5 420 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 BAG5Q9UL15 447 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 CRYL1Q9Y2S2 319 aa3.19□□□□□ -1.9
SCFD1-218ENST00000556256 RRP7AQ9Y3A4 280 aaKnown RBP3.19□□□□□ -1.9
SCFD1-218ENST00000556256 WNT9BO14905 357 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 TSPAN3O60637 253 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 RFPL2O75678 378 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 IL1AP01583 271 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 CENPAP49450 140 aa3.18□□□□□ -1.9
SCFD1-218ENST00000556256 PITX1P78337 314 aaPredicted RBP3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms