RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ALDH3B2P48448 385 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 STILQ15468 1287 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 CHI3L2Q15782 390 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 INAQ16352 499 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 ANKDD1AQ495B1 522 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 PTPN20Q4JDL3 420 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 C6orf52Q5T4I8 152 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 PLEKHA7Q6IQ23 1121 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 NIPAL1Q6NVV3 410 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 PMF1Q6P1K2 205 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 DCDC5Q6ZRR9 648 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 SCD5Q86SK9 330 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 DEFB107AQ8IZN7 70 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 TMEM105Q8N8V8 129 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 FBXO36Q8NEA4 188 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 ADCY4Q8NFM4 1077 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 SH3RF2Q8TEC5 729 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 DEPDC1BQ8WUY9 529 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 CPXM1Q96SM3 734 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 GPATCH1Q9BRR8 931 aaKnown RBP7.71□□□□□ -1.17
LIMA1-216ENST00000552909 MECRQ9BV79 373 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 LINC00597Q9H2U6 94 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 MFSD1Q9H3U5 465 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 MRPL47Q9HD33 250 aaKnown RBP7.71□□□□□ -1.17
LIMA1-216ENST00000552909 PNPLA8Q9NP80 782 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 SCML2Q9UQR0 700 aa7.71□□□□□ -1.17
LIMA1-216ENST00000552909 CFAP54Q96N23 3096 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 A0A1W2PQH9 124 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 MDM4O15151 490 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 CHADO15335 359 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 STAMBPO95630 424 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 OXSR1O95747 527 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-216ENST00000552909 OLFM2O95897 454 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 ERBB2P04626 1255 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 TSHRP16473 764 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 PRDX6P30041 224 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 AVPR2P30518 371 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 EIF2B2P49770 351 aaKnown RBP7.71□□□□□ -1.18
LIMA1-216ENST00000552909 RGS7P49802 495 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 BCAT1P54687 386 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 CYTH1Q15438 398 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 MLF2Q15773 248 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF77Q15935 545 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF829Q3KNS6 432 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-216ENST00000552909 TEX44Q53QW1 395 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 RAB41Q5JT25 222 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 SH2D5Q6ZV89 423 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 NUDCD3Q8IVD9 361 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 PPIL6Q8IXY8 311 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 YAF2Q8IY57 180 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 GSDMBQ8TAX9 411 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 SLC35F5Q8WV83 523 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 IRF7Q92985 503 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 WBP2Q969T9 261 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 TMIGD2Q96BF3 282 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 CHFRQ96EP1 664 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 CGREF1Q99674 301 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 FAM83CQ9BQN1 747 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 EBF4Q9BQW3 602 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 NEURL2Q9BR09 285 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 TRIM56Q9BRZ2 755 aaKnown RBP7.71□□□□□ -1.18
LIMA1-216ENST00000552909 PAIP1Q9H074 479 aaKnown RBP7.71□□□□□ -1.18
LIMA1-216ENST00000552909 FBXO44Q9H4M3 255 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 TBC1D17Q9HA65 648 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 PCDH9Q9HC56 1237 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 HPS4Q9NQG7 708 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 TRNAU1APQ9NX07 287 aaKnown RBP7.71□□□□□ -1.18
LIMA1-216ENST00000552909 OBP2AQ9NY56 170 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 SCHIP1Q9P0W5 487 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-216ENST00000552909 SIRPGQ9P1W8 387 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 DRG1Q9Y295 367 aaKnown RBP7.71□□□□□ -1.18
LIMA1-216ENST00000552909 CPQQ9Y646 472 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 COL4A2P08572 1712 aa7.71□□□□□ -1.18
LIMA1-216ENST00000552909 HELZP42694 1942 aaKnown RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 SOBPA7XYQ1 873 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 K7EPI3 171 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 SGK1O00141 431 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 LEFTY2O00292 366 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 XPO1O14980 1071 aaKnown RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 TLR5O60602 858 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 IFNB1P01574 187 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 FUCA1P04066 466 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 DCNP07585 359 aaKnown RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 GLULP15104 373 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 ARSAP15289 507 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 ITGAXP20702 1163 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 COL9A1P20849 921 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 PPP3CCP48454 512 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 TKTL1P51854 596 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 NEK2P51955 445 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 C21orf59P57076 290 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 STARD6P59095 220 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 TAS2R40P59535 323 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 RPL7AP62424 266 aaKnown RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 SLC7A9P82251 487 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 BST2Q10589 180 aaKnown RBP7.7□□□□□ -1.18
LIMA1-216ENST00000552909 PDK1Q15118 436 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 MSS51Q4VC12 460 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 FNBP1LQ5T0N5 605 aa7.7□□□□□ -1.18
LIMA1-216ENST00000552909 HECTD3Q5T447 861 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms