RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 RPSAP08865 295 aaKnown RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 RBP1P09455 135 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 IRX1P78414 480 aaPredicted RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 KLF10Q13118 480 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 KIAA1841Q6NSI8 718 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 PNPLA1Q8N8W4 532 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 CRISPLD2Q9H0B8 497 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 GPAMQ9HCL2 828 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 ACSS2Q9NR19 701 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 NCKIPSDQ9NZQ3 722 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 SLC7A8Q9UHI5 535 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 A8MT66 165 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 GREM1O60565 184 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 PSMG1O95456 288 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 GLP2RO95838 553 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 CD160O95971 181 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 RHOCP08134 193 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 CCDC166P0CW27 439 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 GALNT1Q10472 559 aaPredicted RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 LSM12Q3MHD2 195 aaKnown RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 TRIM67Q6ZTA4 783 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 LDB1Q86U70 411 aaPredicted RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 OR13C4Q8NGS5 318 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 BLOC1S5Q8TDH9 187 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 TDRD1Q9BXT4 1180 aaKnown RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 SUDS3Q9H7L9 328 aaPredicted RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 CYP4F11Q9HBI6 524 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 E9PBE3 544 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 DCXO43602 365 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 KLHL41O60662 606 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 NCF2P19878 526 aaPredicted RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 KCNA5P22460 613 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 RFC2P35250 354 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 ALDH1A3P47895 512 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 NFKB2Q00653 900 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 ZNF177Q13360 481 aaPredicted RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 TRMT5Q32P41 509 aaKnown RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 PGM2L1Q6PCE3 622 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 SH3RF2Q8TEC5 729 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 FAM161BQ96MY7 647 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 SPO11Q9Y5K1 396 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 PTPRSQ13332 1948 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 MEI4A8MW99 385 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 IPO13O94829 963 aaKnown RBP13.8□□□□□ -0.2
RTN3-210ENST00000540798 COX4I1P13073 169 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 SP100P23497 879 aaPredicted RBP13.8□□□□□ -0.2
RTN3-210ENST00000540798 ADSLP30566 484 aaPredicted RBP13.8□□□□□ -0.2
RTN3-210ENST00000540798 ARF5P84085 180 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 PLD1Q13393 1074 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 PTPRCAPQ14761 206 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 MRNIPQ6NTE8 343 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 KLC3Q6P597 504 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 TCEAL8Q8IYN2 117 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 POU5F2Q8N7G0 328 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 OR4L1Q8NH43 312 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 ACTRT2Q8TDY3 377 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 ZNF558Q96NG5 402 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 PANX3Q96QZ0 392 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 THTPAQ9BU02 230 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 UNKQ9C0B0 810 aaKnown RBP13.8□□□□□ -0.2
RTN3-210ENST00000540798 WDR55Q9H6Y2 383 aaPredicted RBP13.8□□□□□ -0.2
RTN3-210ENST00000540798 MAFFQ9ULX9 164 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 LRRC42Q9Y546 428 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 CCNT2O60583 730 aaKnown RBP13.8□□□□□ -0.2
RTN3-210ENST00000540798 ZMPSTE24O75844 475 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 OLFM2O95897 454 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 STC1P52823 247 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 ACTR3P61158 418 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 TAF1AQ15573 450 aaPredicted RBP13.8□□□□□ -0.2
RTN3-210ENST00000540798 CMPK2Q5EBM0 449 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 DDX53Q86TM3 631 aaKnown RBP13.8□□□□□ -0.2
RTN3-210ENST00000540798 ISCA2Q86U28 154 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 SPNS2Q8IVW8 549 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 AGR3Q8TD06 166 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 ADAMTS19Q8TE59 1207 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 L3HYPDHQ96EM0 354 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 CDKN2AIPNLQ96HQ2 116 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 CLPTM1LQ96KA5 538 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 DDX50Q9BQ39 737 aaKnown RBP13.8□□□□□ -0.2
RTN3-210ENST00000540798 RTKNQ9BST9 563 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 OSBPL1AQ9BXW6 950 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 RNF208Q9H0X6 261 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 TRPC7Q9HCX4 862 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 CATSPERZQ9NTU4 200 aa13.8□□□□□ -0.2
RTN3-210ENST00000540798 INTS10Q9NVR2 710 aaKnown RBP13.8□□□□□ -0.2
RTN3-210ENST00000540798 NEMP2A6NFY4 417 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 KRT36O76013 467 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 CRTAMO95727 393 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 JUNP05412 331 aaKnown RBP13.79□□□□□ -0.2
RTN3-210ENST00000540798 CDC25CP30307 473 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 SLC25A3Q00325 362 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 FRMD7Q6ZUT3 714 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 SLC22A9Q8IVM8 553 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 HERC6Q8IVU3 1022 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 FAM217AQ8IXS0 508 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 SPON2Q9BUD6 331 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 POLR3BQ9NW08 1133 aaPredicted RBP13.79□□□□□ -0.2
RTN3-210ENST00000540798 STX18Q9P2W9 335 aaKnown RBP13.79□□□□□ -0.2
RTN3-210ENST00000540798 ITGAXP20702 1163 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms