RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CDH13P55290 713 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 GJA9P57773 515 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 ATP6V0D1P61421 351 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 TRIM32Q13049 653 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 CYBRD1Q53TN4 286 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 PRMT9Q6P2P2 845 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 SIX5Q8N196 739 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 ZUFSPQ96AP4 578 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 TUBGCP3Q96CW5 907 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 SH3YL1Q96HL8 342 aaPredicted RBP12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 POU2F3Q9UKI9 436 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 CNTNAP1P78357 1384 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 KIAA1217Q5T5P2 1943 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 XYLBO75191 536 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 MLLT10P55197 1068 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 RPS3AP61247 264 aaKnown RBP12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 PIGFQ07326 219 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 MAPRE1Q15691 268 aaKnown RBP12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 HABP4Q5JVS0 413 aaKnown RBP12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 TAF2Q6P1X5 1199 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 RETREG3Q86VR2 466 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 TTC39CQ8N584 583 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 SEPT1Q8WYJ6 367 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 DUS3LQ96G46 650 aaKnown RBP12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 FEM1CQ96JP0 617 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 HOPXQ9BPY8 73 aaPredicted RBP12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 BDH2Q9BUT1 245 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 OSBPL2Q9H1P3 480 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 SIAEQ9HAT2 523 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 MTRRQ9UBK8 725 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 PSMD11O00231 422 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 IPO13O94829 963 aaKnown RBP12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 ERCC2P18074 760 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 TCEA1P23193 301 aaKnown RBP12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 SPCS2Q15005 226 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 OXA1LQ15070 435 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 AGAP9Q5VTM2 703 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 ZDHHC17Q8IUH5 632 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 OSCP1Q8WVF1 389 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 CASS4Q9NQ75 786 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 ACTR3BQ9P1U1 418 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 SCN9AQ15858 1988 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 GPIP06744 558 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 GFAPP14136 432 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 YBX3P16989 372 aaKnown RBP eCLIP12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 PLA2G16P53816 162 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 TNK2Q07912 1038 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 PSMD5Q16401 504 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 TSTD2Q5T7W7 516 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 R3HCC1LQ7Z5L2 792 aaKnown RBP12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 ADGRG5Q8IZF4 528 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 MIER2Q8N344 545 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 TMEM151AQ8N4L1 468 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 OR7A2PQ8NGA2 310 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 HTRA1Q92743 480 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 FAM167AQ96KS9 214 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 DACH2Q96NX9 599 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 MROQ9BYG7 248 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 TPK1Q9H3S4 243 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 FZD10Q9ULW2 581 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 GINS2Q9Y248 185 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 GNGT2O14610 69 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 NADKO95544 446 aaPredicted RBP12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 HMGCS2P54868 508 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 EFCAB12Q6NXP0 572 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 C8orf59Q8N0T1 100 aaPredicted RBP12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 SLC35F5Q8WV83 523 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 CCDC126Q96EE4 140 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 C19orf60Q96EN9 201 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 MYRFLQ96LU7 910 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 FUNDC2Q9BWH2 189 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 TEX13BQ9BXU2 312 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 YTHDF1Q9BYJ9 559 aaKnown RBP12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 MINDY3Q9H8M7 445 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 MEAF6Q9HAF1 191 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 PTPRHQ9HD43 1115 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 TNFRSF12AQ9NP84 129 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 RNF19AQ9NV58 838 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 SARDHQ9UL12 918 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 HCRTO43612 131 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 ABCB7O75027 752 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 TKTP29401 623 aaKnown RBP12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 NKX2-5P52952 324 aaPredicted RBP12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 PITX1P78337 314 aaPredicted RBP12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 ADAM17P78536 824 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 TNFAIP2Q03169 654 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 GRSF1Q12849 480 aaKnown RBP eCLIP12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 TARBP2Q15633 366 aaKnown RBP12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 PHKG1Q16816 387 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 RNF19BQ6ZMZ0 732 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 SULF1Q8IWU6 871 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 TBC1D21Q8IYX1 336 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 PCYT2Q99447 389 aa12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 TDRD1Q9BXT4 1180 aaKnown RBP12.87□□□□□ -0.35
SFSWAP-209ENST00000540469 ARID2Q68CP9 1835 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 A8MT66 165 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 TBC1D4O60343 1298 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 BCAS1O75363 584 aaPredicted RBP12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 CYP2C8P10632 490 aa12.86□□□□□ -0.35
SFSWAP-209ENST00000540469 KCNA5P22460 613 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms