RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 LINC00523Q86TU6 105 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 C12orf56Q8IXR9 622 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 GIMAP5Q96F15 307 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 NPAS2Q99743 824 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 C1QTNF7Q9BXJ2 289 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 RNPEPQ9H4A4 650 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 TOR4AQ9NXH8 423 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 MOCS1Q9NZB8 636 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 SAE1Q9UBE0 346 aaPredicted RBP9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 SRRDQ9UH36 339 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 AP3M1Q9Y2T2 418 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 RAD54BQ9Y620 910 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 DOCK5Q9H7D0 1870 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 ZSWIM8A7E2V4 1837 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 FAM25AB3EWG3 89 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 FAM25CB3EWG5 89 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 FAM25GB3EWG6 89 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 E7ENX8 843 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 FKTNO75072 461 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 XYLBO75191 536 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 CSH1P0DML2 217 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 CSH2P0DML3 217 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 UNGP13051 313 aaPredicted RBP9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 PROZP22891 400 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 HCAR3P49019 387 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 TARDBPQ13148 414 aaKnown RBP eCLIP9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 COL19A1Q14993 1142 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 CTF1Q16619 201 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 Q5BKY6 102 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 PMF1Q6P1K2 205 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 ERMP1Q7Z2K6 904 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 CAND1Q86VP6 1230 aaKnown RBP9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 SFRP1Q8N474 314 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 MYCT1Q8N699 235 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 ZNF781Q8N8C0 355 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 TDRD5Q8NAT2 981 aaKnown RBP9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 TRPV1Q8NER1 839 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 TOP1MTQ969P6 601 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 DACH2Q96NX9 599 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 C2orf40Q9H1Z8 148 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 SOX17Q9H6I2 414 aaPredicted RBP9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 IL37Q9NZH6 218 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 MAT2BQ9NZL9 334 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 TMEM216Q9P0N5 145 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 VPS4AQ9UN37 437 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 PMF1-BGLAPU3KQ54 211 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 BRCA2P51587 3418 aa9.51□□□□□ -0.89
CTNNA1-243ENST00000540387 LRRC37A2A6NM11 1700 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 hCG_1818297A0A087WSY0 165 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 RNF103-CHMP3A0A140T963 221 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 TEX51A0A1B0GUA7 166 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 SLC9A3R1O14745 358 aaPredicted RBP9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 PLIN3O60664 434 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 EPN2O95208 641 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 ATF4P18848 351 aaPredicted RBP9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 MAGP20916 626 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 CAPGP40121 348 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 SLC26A3P40879 764 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 MFAP3P55082 362 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 YIF1BQ5BJH7 314 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 ADGRG5Q8IZF4 528 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 CLYBLQ8N0X4 340 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 TCAIMQ8N3R3 496 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 FAM71DQ8N9W8 422 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 APPL2Q8NEU8 664 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 IL17RDQ8NFM7 739 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 OR6J1Q8NGC5 347 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 PBXIP1Q96AQ6 731 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 ACSF2Q96CM8 615 aaPredicted RBP9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 CEP170P1Q96L14 293 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 DMRTB1Q96MA1 342 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 C17orf62Q9BQA9 187 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 ZSCAN5AQ9BUG6 496 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 WDR55Q9H6Y2 383 aaPredicted RBP9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 LRRC40Q9H9A6 602 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 TIGARQ9NQ88 270 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 ANKEF1Q9NU02 776 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 SEPT9Q9UHD8 586 aaPredicted RBP9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 PCDHGA7Q9Y5G6 932 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 AXIN1O15169 862 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 SCO1O75880 301 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 FAM13AO94988 1023 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 GAP43P17677 238 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 ELK4P28324 431 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 ARCN1P48444 511 aaKnown RBP9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 VAMP7P51809 220 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 KIZQ2M2Z5 673 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 XKR3Q5GH77 459 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 MFSD14CQ5VZR4 134 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 STEAP3Q658P3 488 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 CCBE1Q6UXH8 406 aaPredicted RBP9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 SPATC1Q76KD6 591 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 ZNF438Q7Z4V0 828 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 HID1Q8IV36 788 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 DHRSXQ8N5I4 330 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 CELF2-AS1Q8N7Q2 184 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 PIK3C3Q8NEB9 887 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 RHOXF1Q8NHV9 184 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 CANT1Q8WVQ1 401 aa9.5□□□□□ -0.89
CTNNA1-243ENST00000540387 RSAD2Q8WXG1 361 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms