RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 EIF2S3LQ2VIR3 472 aaKnown RBP4.03□□□□□ -1.76
CD44-217ENST00000525348 SLC9B1Q4ZJI4 515 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 PPP6R3Q5H9R7 873 aaPredicted RBP4.03□□□□□ -1.76
CD44-217ENST00000525348 WDR73Q6P4I2 378 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 MEX3BQ6ZN04 569 aaKnown RBP4.03□□□□□ -1.76
CD44-217ENST00000525348 USP43Q70EL4 1123 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 SMIM29Q86T20 159 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 FAM9BQ8IZU0 186 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 C11orf65Q8NCR3 313 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 FBXL8Q96CD0 374 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 PABPC5Q96DU9 382 aaKnown RBP4.03□□□□□ -1.76
CD44-217ENST00000525348 MTBPQ96DY7 904 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 ZNF385AQ96PM9 386 aaKnown RBP4.03□□□□□ -1.76
CD44-217ENST00000525348 OR1F2PQ96R84 312 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 MMTAG2Q9BU76 263 aaKnown RBP4.03□□□□□ -1.76
CD44-217ENST00000525348 MAGEE1Q9HCI5 957 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 MKKSQ9NPJ1 570 aaPredicted RBP4.03□□□□□ -1.76
CD44-217ENST00000525348 SMARCAL1Q9NZC9 954 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 ZNF224Q9NZL3 707 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 KCNS2Q9ULS6 477 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 PSAT1Q9Y617 370 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 CUX2O14529 1486 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 ERCC6Q03468 1493 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 CENPJQ9HC77 1338 aaPredicted RBP4.02□□□□□ -1.77
CD44-217ENST00000525348 TEX13CA0A0J9YWL9 993 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 HNRNPCL2B2RXH8 293 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 TAF4O00268 1085 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 KRT86O43790 486 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 KRT36O76013 467 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 MT-CYBP00156 380 aaPredicted RBP4.02□□□□□ -1.77
CD44-217ENST00000525348 IGKV3-20P01619 116 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 TFP02787 698 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 IFIT1P09914 478 aaKnown RBP4.02□□□□□ -1.77
CD44-217ENST00000525348 G6PDP11413 515 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 GPTP24298 496 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 CCT5P48643 541 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 KRTAP10-7P60409 375 aaPredicted RBP4.02□□□□□ -1.77
CD44-217ENST00000525348 ARL16Q0P5N6 197 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 BIRC3Q13489 604 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 KRT81Q14533 505 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 ATP13A5Q4VNC0 1218 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 SLC9C2Q5TAH2 1124 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 LCTLQ6UWM7 567 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 NAGSQ8N159 534 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 POC1AQ8NBT0 407 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 AGBL3Q8NEM8 1001 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 MYRIPQ8NFW9 859 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 NEK9Q8TD19 979 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 HTRA1Q92743 480 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 TANKQ92844 425 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 APOPT1Q96IL0 206 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 KLHL15Q96M94 604 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 PLEKHA4Q9H4M7 779 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 EBF2Q9HAK2 575 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 SDF2L1Q9HCN8 221 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 CNGB3Q9NQW8 809 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 TXLNGQ9NUQ3 528 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 SIX4Q9UIU6 781 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 FAM96BQ9Y3D0 163 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 STON1Q9Y6Q2 735 aa4.02□□□□□ -1.77
CD44-217ENST00000525348 IGHV4OR15-8A0A075B7B6 117 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 A0A1W2PQM1 296 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 TTC36A6NLP5 189 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 BMPR1BO00238 502 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 HOXC11O43248 304 aaPredicted RBP4.01□□□□□ -1.77
CD44-217ENST00000525348 GRID2O43424 1007 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 XPNPEP2O43895 674 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 MTA2O94776 668 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 PLGP00747 810 aaPredicted RBP4.01□□□□□ -1.77
CD44-217ENST00000525348 IGLV2-11P01706 119 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 PYGLP06737 847 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 COX7A2P14406 83 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 STX2P32856 288 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 TUBP50607 506 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 NLRP5P59047 1200 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 VAMP2P63027 116 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 TRPC3Q13507 836 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 NEDD9Q14511 834 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 PPP2R5BQ15173 497 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 QSOX2Q6ZRP7 698 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 TUBA1AQ71U36 451 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 CHERPQ8IWX8 916 aaKnown RBP4.01□□□□□ -1.77
CD44-217ENST00000525348 NME8Q8N427 588 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 ZBTB2Q8N680 514 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 SCCPDHQ8NBX0 429 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 BEST2Q8NFU1 509 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 ZCCHC10Q8TBK6 192 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 SECTM1Q8WVN6 248 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 USP13Q92995 863 aaPredicted RBP4.01□□□□□ -1.77
CD44-217ENST00000525348 HVCN1Q96D96 273 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 ZNF570Q96NI8 536 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 NODALQ96S42 347 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 TUBA1CQ9BQE3 449 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 UBTD1Q9HAC8 227 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 C17orf75Q9HAS0 396 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 MDFICQ9P1T7 246 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 TBX20Q9UMR3 447 aa4.01□□□□□ -1.77
CD44-217ENST00000525348 ATXN2Q99700 1313 aaKnown RBP4□□□□□ -1.77
CD44-217ENST00000525348 FANCIQ9NVI1 1328 aa4□□□□□ -1.77
CD44-217ENST00000525348 RFPL2O75678 378 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms