RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 MDM4O15151 490 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 ATP6V1G2O95670 118 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 C4BPAP04003 597 aaKnown RBP16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 PSMB9P28065 219 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 MAPKAPK2P49137 400 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 CPSF6Q16630 551 aaKnown RBP eCLIP16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 NDUFA9Q16795 377 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 TCHHL1Q5QJ38 904 aaPredicted RBP16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 GPR180Q86V85 440 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 POU5F2Q8N7G0 328 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 FLCNQ8NFG4 579 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 GPR156Q8NFN8 814 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 BRI3BPQ8WY22 251 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 LENG1Q96BZ8 264 aaPredicted RBP16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 CSPG4P5Q96PW8 444 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 CPXM1Q96SM3 734 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 AIF1LQ9BQI0 150 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 EVLQ9UI08 416 aaPredicted RBP16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 NDRG2Q9UN36 371 aaKnown RBP16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 COLEC10Q9Y6Z7 277 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 AP1S1P61966 158 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 ARCQ7LC44 396 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 GALNT13Q8IUC8 556 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 ADGRG2Q8IZP9 1017 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 PRELID2Q8N945 189 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 ZNF248Q8NDW4 579 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 SRFBP1Q8NEF9 429 aaKnown RBP16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 KCTD4Q8WVF5 259 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 C19orf60Q96EN9 201 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 CPQQ9Y646 472 aa16.29■□□□□ 0.2
PCDHA3-201ENST00000522353 ARVCFO00192 962 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 EPHB6O15197 1021 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 SMNDC1O75940 238 aaKnown RBP eCLIP16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 STBD1O95210 358 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 HNRNPH3P31942 346 aaKnown RBP16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 SPAM1P38567 509 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 GNA12Q03113 381 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 CTBP1Q13363 440 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 SQLEQ14534 574 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 TPGS2Q68CL5 300 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 UBE2R2Q712K3 238 aaPredicted RBP16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 SLC22A17Q8WUG5 538 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 REXO5Q96IC2 774 aaKnown RBP16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 FZD9O00144 591 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 NFKBIEO00221 500 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 STX11O75558 287 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 RPP40O75818 363 aaKnown RBP16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 HLA-DQA2P01906 255 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 HK2P52789 917 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 TAS2R40P59535 323 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 RPL38P63173 70 aaKnown RBP16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 PRKG2Q13237 762 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 GPAT3Q53EU6 434 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 INO80DQ53TQ3 878 aaPredicted RBP16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 ZNF662Q6ZS27 426 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 GDPD5Q8WTR4 605 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 AP2M1Q96CW1 435 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 SLC9A8Q9Y2E8 581 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 INSL6Q9Y581 213 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 GRIA4P48058 902 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 SNAP47Q5SQN1 464 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 NEK5Q6P3R8 708 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 IRF2BP2Q7Z5L9 587 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 LEMD2Q8NC56 503 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 OR52K2Q8NGK3 314 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 NELL1Q92832 810 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 POP5Q969H6 163 aaKnown RBP16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 Q9Y3F1 56 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 MED1Q15648 1581 aaPredicted RBP16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 MYL12BO14950 172 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 SSR2P43308 183 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 XYLT1Q86Y38 959 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 PTCD2Q8WV60 388 aaKnown RBP16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 ING5Q8WYH8 240 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 FAXDC2Q96IV6 333 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 KREMEN1Q96MU8 473 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 BTBD9Q96Q07 612 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 FAM83DQ9H4H8 585 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 ACSS3Q9H6R3 686 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 PCDH12Q9NPG4 1184 aa16.28■□□□□ 0.2
PCDHA3-201ENST00000522353 PDE9AO76083 593 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 ITGA2P17301 1181 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 DGKGP49619 791 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 ANXA8L1Q5VT79 327 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 ZNF605Q86T29 641 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 STK32AQ8WU08 396 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 TNFRSF25Q93038 417 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 TRMOQ9BU70 441 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 MRPS26Q9BYN8 205 aaKnown RBP16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 C3orf14Q9HBI5 128 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 NFKBIL1Q9UBC1 381 aaPredicted RBP16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 ZNF214Q9UL59 606 aaPredicted RBP16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 VPS4AQ9UN37 437 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 SF1Q15637 639 aaKnown RBP16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 RAB30Q15771 203 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 INAQ16352 499 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 ATP13A5Q4VNC0 1218 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 PLEKHA7Q6IQ23 1121 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 ZNF549Q6P9A3 640 aa16.27■□□□□ 0.2
PCDHA3-201ENST00000522353 TRIM40Q6P9F5 258 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms