RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 LLGL1Q15334 1064 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 SF3A2Q15428 464 aaKnown RBP8.38□□□□□ -1.07
CCL28-204ENST00000514421 TEAD4Q15561 434 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 UGP2Q16851 508 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 TUBB8Q3ZCM7 444 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 TTMPQ5BVD1 217 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 TNFAIP8L3Q5GJ75 292 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 AGBL2Q5U5Z8 902 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 BRAT1Q6PJG6 821 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 NPNTQ6UXI9 565 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 PARS2Q7L3T8 475 aaKnown RBP8.38□□□□□ -1.07
CCL28-204ENST00000514421 TRIM69Q86WT6 500 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 HORMAD1Q86X24 394 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 CAMK1DQ8IU85 385 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 PGBD5Q8N414 524 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 ZCCHC9Q8N567 271 aaKnown RBP8.38□□□□□ -1.07
CCL28-204ENST00000514421 ACTL9Q8TC94 416 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 P3H4Q92791 437 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 SKA1Q96BD8 255 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 HDAC11Q96DB2 347 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 PGM2Q96G03 612 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 ATP6V1G3Q96LB4 118 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 OLFM3Q96PB7 478 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 LGMNQ99538 433 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 MGME1Q9BQP7 344 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 ORAI3Q9BRQ5 295 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 TRIM31Q9BZY9 425 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 SMOC1Q9H4F8 434 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 EBF2Q9HAK2 575 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 NOD2Q9HC29 1040 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 CAPN10Q9HC96 672 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 NT5MQ9NPB1 228 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 VPS18Q9P253 973 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 SAE1Q9UBE0 346 aaPredicted RBP8.38□□□□□ -1.07
CCL28-204ENST00000514421 DMTF1Q9Y222 760 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.38□□□□□ -1.07
CCL28-204ENST00000514421 ZNF292O60281 2723 aa8.38□□□□□ -1.07
CCL28-204ENST00000514421 CNOT1A5YKK6 2376 aaKnown RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 TSPAN11A1L157 253 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 TTC24A2A3L6 582 aaPredicted RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 GOLGA6CA6NDK9 693 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 TRAFD1O14545 582 aaPredicted RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 ARHGAP33O14559 1287 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 DNALI1O14645 258 aaPredicted RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 POLR3GO15318 223 aaPredicted RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 RIPK2O43353 540 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 PIGNO95427 931 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 CFIP05156 583 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 GOLGA6DP0CG33 693 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 SDHBP21912 280 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 STIP1P31948 543 aaKnown RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 AFF3P51826 1226 aaKnown RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 MAXP61244 160 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 IFI35P80217 286 aaPredicted RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 OTUD4Q01804 1114 aaKnown RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 ELP6Q0PNE2 266 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 SGCGQ13326 291 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 XRCC4Q13426 336 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 STAT4Q14765 748 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 MORF4L2Q15014 288 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 TMEM52BQ4KMG9 183 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 AASDHQ4L235 1098 aaPredicted RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 SETMARQ53H47 684 aaPredicted RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 TEX44Q53QW1 395 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 SLC45A4Q5BKX6 768 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 TCEAL6Q6IPX3 200 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 KIAA1161Q6NSJ0 714 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 PCGF5Q86SE9 256 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 HOOK3Q86VS8 718 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 PAF1Q8N7H5 531 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 LRRN4Q8WUT4 740 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 TFB1MQ8WVM0 346 aaKnown RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 ASB12Q8WXK4 309 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 SPOCK2Q92563 424 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 TCEAL3Q969E4 200 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 ARL8AQ96BM9 186 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 TLCD1Q96CP7 247 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 ECHDC3Q96DC8 303 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 SERAC1Q96JX3 654 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 RUFY1Q96T51 708 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 IL12RB2Q99665 862 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 SEMA3CQ99985 751 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 C1QTNF2Q9BXJ5 285 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 SLC17A9Q9BYT1 436 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 ZDHHC5Q9C0B5 715 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 POLR1EQ9GZS1 481 aaKnown RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 TM9SF3Q9HD45 589 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 GOLGA6AQ9NYA3 693 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.37□□□□□ -1.07
CCL28-204ENST00000514421 ASIC3Q9UHC3 531 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 ANAPC5Q9UJX4 755 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 PHTF1Q9UMS5 762 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 SHOC2Q9UQ13 582 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 ATP8A1Q9Y2Q0 1164 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 PCDHGC4Q9Y5F7 938 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 HS3ST3A1Q9Y663 406 aa8.37□□□□□ -1.07
CCL28-204ENST00000514421 CACNA1EQ15878 2313 aa8.36□□□□□ -1.07
CCL28-204ENST00000514421 ATXN2Q99700 1313 aaKnown RBP8.36□□□□□ -1.07
CCL28-204ENST00000514421 EML5Q05BV3 1969 aa8.36□□□□□ -1.07
CCL28-204ENST00000514421 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms