RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 LYSMD1Q96S90 227 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 CDCA3Q99618 268 aaPredicted RBP8.39□□□□□ -1.07
RNF4-220ENST00000513578 CPEB1Q9BZB8 566 aaKnown RBP8.39□□□□□ -1.07
RNF4-220ENST00000513578 STN1Q9H668 368 aaKnown RBP8.39□□□□□ -1.07
RNF4-220ENST00000513578 CAB39LQ9H9S4 337 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 KCNK13Q9HB14 408 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 PRDM6Q9NQX0 595 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 SPHK2Q9NRA0 654 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 CATSPERZQ9NTU4 200 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 KCNK4Q9NYG8 393 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 FBXO10Q9UK96 956 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 CLEC4EQ9ULY5 219 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 SLC12A4Q9UP95 1085 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 CCL26Q9Y258 94 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 VPS9D1Q9Y2B5 631 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 VWA7Q9Y334 891 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 KCTD3Q9Y597 815 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 PCDHGC4Q9Y5F7 938 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 HCFC2Q9Y5Z7 792 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 ARL5AQ9Y689 179 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 COMMD10Q9Y6G5 202 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 UNC80Q8N2C7 3258 aa8.39□□□□□ -1.07
RNF4-220ENST00000513578 KIAA1549LQ6ZVL6 1849 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 CCDC195A0A1B0GUA6 201 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 CCDC78A2IDD5 438 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 WASH3PC4AMC7 463 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 PFDN6O15212 129 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 TRIM13O60858 407 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 DNAJC8O75937 253 aaPredicted RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 ATP5HO75947 161 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 TOP3BO95985 862 aaKnown RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 MT-CO1P00395 513 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 CA3P07451 260 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 SBK3P0C264 359 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 RALBP11234 206 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 SRCP12931 536 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 ALOX15P16050 662 aaPredicted RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 COL9A1P20849 921 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 FDXRP22570 491 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 HLA-FP30511 346 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 HMGCLP35914 325 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 SERPINB5P36952 375 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 STC1P52823 247 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 ARFIP2P53365 341 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 SLC12A2P55011 1212 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 ADARP55265 1226 aaKnown RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 DNAJB13P59910 316 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 SNRPD1P62314 119 aaKnown RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 IRF9Q00978 393 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 BCL2L1Q07817 233 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 ACTN3Q08043 901 aaPredicted RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 BNIP1Q12981 228 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 SETDB1Q15047 1291 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 DLG2Q15700 870 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 C9orf50Q5SZB4 431 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 RNF187Q5TA31 235 aaPredicted RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 HECTD2Q5U5R9 776 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 LRRC8EQ6NSJ5 796 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 CNSTQ6PJW8 725 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 LINGO4Q6UY18 593 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 TMEM184AQ6ZMB5 413 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 RAPH1Q70E73 1250 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 GLT6D1Q7Z4J2 308 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 GRASPQ7Z6J2 395 aaPredicted RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 PTAR1Q7Z6K3 402 aaPredicted RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 TMEM25Q86YD3 366 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 C10orf107Q8IVU9 208 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 CEP97Q8IW35 865 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 ADGRG2Q8IZP9 1017 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 CBARPQ8N350 705 aaPredicted RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 FITM2Q8N6M3 262 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 LPCAT1Q8NF37 534 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 OR2AP1Q8NGE2 309 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 OR13C4Q8NGS5 318 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 TTC8Q8TAM2 541 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 RIN3Q8TB24 985 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 PDCD6IPQ8WUM4 868 aaKnown RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 VOPP1Q96AW1 172 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 ECHDC3Q96DC8 303 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 CCDC126Q96EE4 140 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 ATXN7L3BQ96GX2 97 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 MYO19Q96H55 970 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 ELMO2Q96JJ3 720 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 EXOC2Q96KP1 924 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 RMDN2Q96LZ7 410 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 MRPL57Q9BQC6 102 aaKnown RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 MECRQ9BV79 373 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 ATP13A3Q9H7F0 1226 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 SAR1AQ9NR31 198 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 FBXO6Q9NRD1 293 aaPredicted RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 ABCF3Q9NUQ8 709 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 DZANK1Q9NVP4 752 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 ZNF358Q9NW07 568 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 OXSMQ9NWU1 459 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 OBP2AQ9NY56 170 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 IL17CQ9P0M4 197 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 MARCH4Q9P2E8 410 aaPredicted RBP8.38□□□□□ -1.07
RNF4-220ENST00000513578 HAO1Q9UJM8 370 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 SLC25A13Q9UJS0 675 aa8.38□□□□□ -1.07
RNF4-220ENST00000513578 RUVBL2Q9Y230 463 aaKnown RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms