RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 RAB12Q6IQ22 244 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 CRTC1Q6UUV9 634 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 HIST2H3AQ71DI3 136 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 CHMP1BQ7LBR1 199 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 PAGE2Q7Z2X7 111 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 RETREG3Q86VR2 466 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 ZNF276Q8N554 614 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 CDYL2Q8N8U2 506 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 OR7G3Q8NG95 312 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 OR4A15Q8NGL6 344 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 OR10A6Q8NH74 314 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 SPATA22Q8NHS9 363 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 FAM216AQ8WUB2 273 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 TNFAIP8L1Q8WVP5 186 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 NECTIN2Q92692 538 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 AGAP3Q96P47 875 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 TIMM29Q9BSF4 260 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 TRMOQ9BU70 441 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 BLZF1Q9H2G9 400 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 TRIT1Q9H3H1 467 aaKnown RBP3.59□□□□□ -1.84
USP53-205ENST00000509769 CXorf21Q9HAI6 301 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 TREM1Q9NP99 234 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 PRMT8Q9NR22 394 aaPredicted RBP3.59□□□□□ -1.84
USP53-205ENST00000509769 DUSP22Q9NRW4 184 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 PACSIN3Q9UKS6 424 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 KCNH4Q9UQ05 1017 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 CRYL1Q9Y2S2 319 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 PCDHB6Q9Y5E3 794 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 GMPPBQ9Y5P6 360 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 RNF215Q9Y6U7 377 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 FLT1P17948 1338 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 MYO5BQ9ULV0 1848 aa3.59□□□□□ -1.84
USP53-205ENST00000509769 A0A087X1B8 175 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 LOC102724428A0A0B4J2F2 783 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 DPPA5A6NC42 116 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 C3orf70A6NLC5 250 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 H3BUI4 141 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 RGS14O43566 566 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TLL1O43897 1013 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 RNASEH1O60930 286 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 TIPRLO75663 272 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ANXA9O76027 345 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ZNF432O94892 652 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 IFNA21P01568 189 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 GCP02774 474 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 IFNA6P05013 189 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 KITP10721 976 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ATP6V1B2P21281 511 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SAT1P21673 171 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CD9P21926 228 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 COILP38432 576 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 HALP42357 657 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 DPP6P42658 865 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ARSEP51690 589 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SIK1P57059 783 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TPI1P60174 286 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SKP1P63208 163 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 KCNMA1Q12791 1236 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 USP4Q13107 963 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 HNF4GQ14541 408 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 KCTD2Q14681 263 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ERFEQ4G0M1 354 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SH3PXD2AQ5TCZ1 1133 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TATDN1Q6P1N9 297 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SAMD7Q7Z3H4 446 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ADGRF2Q8IZF7 708 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 UNC5BQ8IZJ1 945 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 METTL4Q8N3J2 472 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 Q8N402 240 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 FAM13CQ8NE31 585 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 C10orf90Q96M02 699 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 QRFPRQ96P65 431 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PPP1R10Q96QC0 940 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 OR14A2Q96R54 314 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 MMS19Q96T76 1030 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 LGMNQ99538 433 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 MYOCQ99972 504 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 HEPHQ9BQS7 1158 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ZNF416Q9BWM5 594 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ANO3Q9BYT9 981 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PUS3Q9BZE2 481 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 UCK2Q9BZX2 261 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ZNF436Q9C0F3 470 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 NYXQ9GZU5 481 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SIK2Q9H0K1 926 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 DENND2DQ9H6A0 471 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 XPNPEP3Q9NQH7 507 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ADAM22Q9P0K1 906 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 EIF2B4Q9UI10 523 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 PCDHA4Q9UN74 947 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ZFR2Q9UPR6 939 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 SAMD4AQ9UPU9 718 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 LEMD3Q9Y2U8 911 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ERBB3P21860 1342 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 BTNL10A8MVZ5 291 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ZNF99A8MXY4 864 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 NPIPA2E9PIF3 369 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 K7ENM7 598 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CHL1O00533 1208 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 WNT7AO00755 349 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms