RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 AKAP13Q12802 2813 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 CACNA1BQ00975 2339 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 USP24Q9UPU5 2620 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 A0A1W2PQJ5 194 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 A0A1W2PQU0 124 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 FAM170AA1A519 330 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 GMNCA6NCL1 334 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 TMEM191CA6NGB0 347 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 LRRC53A6NM62 1247 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 C1QTNF9BB2RNN3 333 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 PDLIM1O00151 329 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 PLK4O00444 970 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 FGF10O15520 208 aaPredicted RBP8.12□□□□□ -1.11
SCN1A-207ENST00000507401 AP1G1O43747 822 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 GSRP00390 522 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 GYPCP04921 128 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 ITGAVP06756 1048 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 C1QTNF9P0C862 333 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 ITGB7P26010 798 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 EPHB2P29323 1055 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 GCKP35557 465 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 ACVRL1P37023 503 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 CCNHP51946 323 aaPredicted RBP8.12□□□□□ -1.11
SCN1A-207ENST00000507401 NEK3P51956 506 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 ZNF135P52742 658 aaPredicted RBP8.12□□□□□ -1.11
SCN1A-207ENST00000507401 EIF3BP55884 814 aaKnown RBP8.12□□□□□ -1.11
SCN1A-207ENST00000507401 SNRPD1P62314 119 aaKnown RBP8.12□□□□□ -1.11
SCN1A-207ENST00000507401 PPP2CBP62714 309 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 RPS21P63220 83 aaKnown RBP8.12□□□□□ -1.11
SCN1A-207ENST00000507401 PPP2CAP67775 309 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 RAD51Q06609 339 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 CLN3Q13286 438 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 BIRC2Q13490 618 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 CUL1Q13616 776 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 ITIH4Q14624 930 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 ACAP1Q15027 740 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 SHBQ15464 509 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 IFI16Q16666 785 aaKnown RBP8.12□□□□□ -1.11
SCN1A-207ENST00000507401 ZNF284Q2VY69 593 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 MYLK3Q32MK0 819 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 PARP15Q460N3 678 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 CCDC122Q5T0U0 273 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 KIAA1161Q6NSJ0 714 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 SCYL2Q6P3W7 929 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 FBXL19Q6PCT2 694 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 TMPRSS7Q7RTY8 843 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 PSTKQ8IV42 348 aaKnown RBP8.12□□□□□ -1.11
SCN1A-207ENST00000507401 RTL3Q8N8U3 475 aaKnown RBP8.12□□□□□ -1.11
SCN1A-207ENST00000507401 TMEM145Q8NBT3 493 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 OR2AP1Q8NGE2 309 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 HCAR2Q8TDS4 363 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 FNIP1Q8TF40 1166 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 ASB12Q8WXK4 309 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 SYN2Q92777 582 aaPredicted RBP8.12□□□□□ -1.11
SCN1A-207ENST00000507401 ARRDC3Q96B67 414 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 ARHGEF26Q96DR7 871 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 KLHDC7BQ96G42 594 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 GDAP1L1Q96MZ0 367 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 MCEEQ96PE7 176 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 OSBPL1AQ9BXW6 950 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 SLC17A9Q9BYT1 436 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 TTYH3Q9C0H2 523 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 TNKS2Q9H2K2 1166 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 MRPL47Q9HD33 250 aaKnown RBP8.12□□□□□ -1.11
SCN1A-207ENST00000507401 KLK13Q9UKR3 277 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 CAPN11Q9UMQ6 739 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 NEU3Q9UQ49 428 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 MFHAS1Q9Y4C4 1052 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 PCDHGA1Q9Y5H4 931 aa8.12□□□□□ -1.11
SCN1A-207ENST00000507401 FRYQ5TBA9 3013 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 COL5A1P20908 1838 aaPredicted RBP8.11□□□□□ -1.11
SCN1A-207ENST00000507401 DOCK9Q9BZ29 2069 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 TSPAN6O43657 245 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 RNF8O76064 485 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 PCDH8O95206 1070 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 FTLP02792 175 aaPredicted RBP8.11□□□□□ -1.11
SCN1A-207ENST00000507401 CAPNS1P04632 268 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 ATXN1LP0C7T5 689 aaKnown RBP8.11□□□□□ -1.11
SCN1A-207ENST00000507401 MYZAPP0CAP1 466 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 MYBL1P10243 752 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 ADRB3P13945 408 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 SPINK2P20155 84 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 HNRNPA2B1P22626 353 aaKnown RBP8.11□□□□□ -1.11
SCN1A-207ENST00000507401 CCND1P24385 295 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 MAT2AP31153 395 aaKnown RBP8.11□□□□□ -1.11
SCN1A-207ENST00000507401 AKT2P31751 481 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 HCAR3P49019 387 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 DNA2P51530 1060 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 SUOXP51687 545 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 NDST2P52849 883 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 VAC14Q08AM6 782 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 DYNC1I2Q13409 638 aaKnown RBP8.11□□□□□ -1.11
SCN1A-207ENST00000507401 NAA25Q14CX7 972 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 SPA17Q15506 151 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 ASIC2Q16515 512 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 PPP2R5EQ16537 467 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 POM121L1PQ3SYA9 428 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 ANKRD20A8PQ5CZ79 823 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 ZNF805Q5CZA5 627 aa8.11□□□□□ -1.11
SCN1A-207ENST00000507401 PRAMEF14Q5SWL7 426 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms