RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 SPRED1Q7Z699 444 aa21.11■□□□□ 0.97
SQSTM1-210ENST00000506042 PSTKQ8IV42 348 aaKnown RBP21.11■□□□□ 0.97
SQSTM1-210ENST00000506042 ZNF599Q96NL3 588 aa21.11■□□□□ 0.97
SQSTM1-210ENST00000506042 ZMYND15Q9H091 742 aa21.11■□□□□ 0.97
SQSTM1-210ENST00000506042 KLC2Q9H0B6 622 aa21.11■□□□□ 0.97
SQSTM1-210ENST00000506042 ZWILCHQ9H900 591 aa21.11■□□□□ 0.97
SQSTM1-210ENST00000506042 PDFQ9HBH1 243 aa21.11■□□□□ 0.97
SQSTM1-210ENST00000506042 PNMA8BQ9ULN7 279 aaPredicted RBP21.11■□□□□ 0.97
SQSTM1-210ENST00000506042 SMG1Q96Q15 3661 aaKnown RBP21.11■□□□□ 0.97
SQSTM1-210ENST00000506042 A0A1W2PQM1 296 aa21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 HGSO14964 777 aaPredicted RBP21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 MYCLP1P12525 358 aaPredicted RBP21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 TNFAIP3P21580 790 aa21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 MAPK10P53779 464 aa21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 ACAD10Q6JQN1 1059 aa21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 LIPIQ6XZB0 460 aa21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 ATG14Q6ZNE5 492 aa21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 NUS1Q96E22 293 aa21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 RABGEF1Q9UJ41 708 aa21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 RNF215Q9Y6U7 377 aa21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 KALRNO60229 2985 aa21.1■□□□□ 0.97
SQSTM1-210ENST00000506042 PRSS38A1L453 326 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 LGALS16A8MUM7 142 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 STMND1H3BQB6 276 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 J3KR12 359 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 TEX33O43247 280 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 EFSO43281 561 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 SOCS5O75159 536 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 MAN1A1P33908 653 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 PPM1FP49593 454 aaPredicted RBP21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 CSRP3P50461 194 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 SCNN1BP51168 640 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 COPB1P53618 953 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 ZFP36L1Q07352 338 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 TRA2AQ13595 282 aaKnown RBP eCLIP21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 AFMIDQ63HM1 303 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 PNCKQ6P2M8 343 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 TSEN2Q8NCE0 465 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 OR1E3Q8WZA6 343 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 FUBP1Q96AE4 644 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 ECHDC3Q96DC8 303 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 CELF6Q96J87 481 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 PCDHB18PQ96TA0 734 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 MAGEB5Q9BZ81 275 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 SEMA4CQ9C0C4 833 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 ANO10Q9NW15 660 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 SIK3Q9Y2K2 1263 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 SCINQ9Y6U3 715 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 LRP4O75096 1905 aa21.09■□□□□ 0.97
SQSTM1-210ENST00000506042 PPFIA2O75334 1257 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 ATP1A3P13637 1013 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 CCNB1P14635 433 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 TRIM23P36406 574 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 ARL4AP40617 200 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 GPR3P46089 330 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 KLK7P49862 253 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 RPL7AP62424 266 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 MYL5Q02045 173 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 HLTFQ14527 1009 aaKnown RBP eCLIP21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 PPP6R3Q5H9R7 873 aaPredicted RBP21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 RFX8Q6ZV50 586 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 MCOLN2Q8IZK6 566 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 NETO2Q8NC67 525 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 GPBAR1Q8TDU6 330 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 TRIM11Q96F44 468 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 PSKH2Q96QS6 385 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 SLC39A8Q9C0K1 460 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 CDH19Q9H159 772 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 CARS2Q9HA77 564 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 FGF22Q9HCT0 170 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 TRNAU1APQ9NX07 287 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 MYO6Q9UM54 1294 aa21.08■□□□□ 0.97
SQSTM1-210ENST00000506042 LRRK1Q38SD2 2015 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 PRAMEF33A0A0G2JMD5 474 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 TMEM202A6NGA9 273 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 PSMD11O00231 422 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 PRAMEF10O60809 474 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 PYGLP06737 847 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 HGFP14210 728 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 ALDH4A1P30038 563 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 HCAR3P49019 387 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 LBRQ14739 615 aaKnown RBP21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 RALGPS1Q5JS13 557 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 USP45Q70EL2 814 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 ZDHHC1Q8WTX9 485 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 PDCD6IPQ8WUM4 868 aaKnown RBP21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 USP7Q93009 1102 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 VOPP1Q96AW1 172 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 ERGIC2Q96RQ1 377 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 SEMA3CQ99985 751 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 TMEM168Q9H0V1 697 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 STN1Q9H668 368 aaKnown RBP21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 MRPL47Q9HD33 250 aaKnown RBP21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 FANCLQ9NW38 375 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 ANKRD36A6QL64 1941 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 ZNF462Q96JM2 2506 aa21.07■□□□□ 0.96
SQSTM1-210ENST00000506042 PMS2P1A4D2B8 440 aa21.06■□□□□ 0.96
SQSTM1-210ENST00000506042 GOLGA6CA6NDK9 693 aa21.06■□□□□ 0.96
SQSTM1-210ENST00000506042 GOLGA6BA6NDN3 693 aa21.06■□□□□ 0.96
SQSTM1-210ENST00000506042 H3BRJ5 948 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms