RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	GSTA5	Q7RTV2	222 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CYP2U1	Q7Z449	544 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SYT12	Q8IV01	421 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	RGL4	Q8IZJ4	473 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	LPCAT1	Q8NF37	534 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	C1orf216	Q8TAB5	229 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CXorf40A	Q8TE69	158 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	LYSMD1	Q96S90	227 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PHOX2B	Q99453	314 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	MLPH	Q9BV36	600 aa	Predicted RBP	11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	EBF2	Q9HAK2	575 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	GOLGA6A	Q9NYA3	693 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PAK5	Q9P286	719 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	B4GALT6	Q9UBX8	382 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	EIF2B4	Q9UI10	523 aa	Known RBP	11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	DMTF1	Q9Y222	760 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	MYO15A	Q9UKN7	3530 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	FRYL	O94915	3013 aa		11.95	□□□□□ -0.5
PDLIM5-208	ENST00000504489	ASCC3	Q8N3C0	2202 aa	Known RBP	11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	IGLON5	A6NGN9	336 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CAPN8	A6NHC0	703 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	NPIPB15	A6NHN6	443 aa	Predicted RBP	11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489		F5H423	210 aa	Predicted RBP	11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CCDC188	H7C350	402 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	MMP20	O60882	483 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	TM7SF2	O76062	418 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	ETS1	P14921	441 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CTPS1	P17812	591 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	HLA-DPA1	P20036	260 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	MAOB	P27338	520 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	MAT2A	P31153	395 aa	Known RBP	11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	RPL22	P35268	128 aa	Known RBP	11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	ADRA1A	P35348	466 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	HNF1B	P35680	557 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	TNNT3	P45378	269 aa	Predicted RBP	11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	LIG3	P49916	1009 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CREB5	Q02930	508 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	AGER	Q15109	404 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SLC1A5	Q15758	541 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	KCTD11	Q693B1	232 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CCDC137	Q6PK04	289 aa	Known RBP	11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	RANBP10	Q6VN20	620 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	KDELC2	Q7Z4H8	507 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	RABEPK	Q7Z6M1	372 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CBARP	Q8N350	705 aa	Predicted RBP	11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	GLIS1	Q8NBF1	620 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	IPMK	Q8NFU5	416 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	GRK7	Q8WTQ7	553 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SNX19	Q92543	992 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PIGK	Q92643	395 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	RMDN1	Q96DB5	314 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	LENG8	Q96PV6	779 aa	Predicted RBP	11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SRPK1	Q96SB4	655 aa	Known RBP	11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	WRAP53	Q9BUR4	548 aa	Known RBP	11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SLC17A9	Q9BYT1	436 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	ARRDC1-AS1	Q9H2J1	176 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PLA2G2E	Q9NZK7	142 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SUSD2	Q9UGT4	822 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	GMEB2	Q9UKD1	530 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	LAMA1	P25391	3075 aa		11.94	□□□□□ -0.5
PDLIM5-208	ENST00000504489	WDR87	Q6ZQQ6	2873 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PTPRZ1	P23471	2315 aa	Predicted RBP	11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	ERI2	A8K979	691 aa	Known RBP	11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PRR5-ARHGAP8	B1AHC4	643 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PRAMEF26	H0Y7S4	382 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PSMD11	O00231	422 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	LRP3	O75074	770 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	HEXIM1	O94992	359 aa	Known RBP	11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PAK4	O96013	591 aa	Predicted RBP	11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	FGF1	P05230	155 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	ALPI	P09923	528 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	ATXN1L	P0C7T5	689 aa	Known RBP	11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	ELFN1	P0C7U0	828 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	ZSCAN5DP	P0CG00	497 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	C6	P13671	934 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	GNS	P15586	552 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	ZNF30	P17039	623 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	MPL	P40238	635 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SEMG2	Q02383	582 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SGCG	Q13326	291 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SEMA5A	Q13591	1074 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	FGL2	Q14314	439 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	GALNT3	Q14435	633 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PTPRR	Q15256	657 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CNGA3	Q16281	694 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CDKN3	Q16667	212 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SIRPB2	Q5JXA9	342 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PLA2G2C	Q5R387	149 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	NAPEPLD	Q6IQ20	393 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CRTC1	Q6UUV9	634 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	THSD4	Q6ZMP0	1018 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	PRUNE1	Q86TP1	453 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	RAVER1	Q8IY67	606 aa	Known RBP	11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	CEP76	Q8TAP6	659 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	KLK6	Q92876	244 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SLCO2A1	Q92959	643 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	LRRC45	Q96CN5	670 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	RUNDC3B	Q96NL0	473 aa		11.93	□□□□□ -0.5
PDLIM5-208	ENST00000504489	SMIM14	Q96QK8	99 aa		11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms