RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ADRB3P13945 408 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 CD6P30203 668 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 TNNT3P45378 269 aaPredicted RBP10.09□□□□□ -0.79
NUP54-203ENST00000504173 EPHB1P54762 984 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 WNT3AP56704 352 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 C2orf54Q08AI8 447 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 MPP3Q13368 585 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 IHHQ14623 411 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 PPP1R7Q15435 360 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 PARP6Q2NL67 630 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 LRRC73Q5JTD7 316 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 DNTTIP2Q5QJE6 756 aaKnown RBP10.09□□□□□ -0.79
NUP54-203ENST00000504173 PIP5KL1Q5T9C9 394 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 FAXCQ5TGI0 409 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 AGBL4Q5VU57 503 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 ZSWIM9Q86XI8 627 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 GLIS1Q8NBF1 620 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 OR14C36Q8NHC7 312 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 ECHDC3Q96DC8 303 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 IFT43Q96FT9 208 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 TOE1Q96GM8 510 aaKnown RBP10.09□□□□□ -0.79
NUP54-203ENST00000504173 OXNAD1Q96HP4 312 aaPredicted RBP10.09□□□□□ -0.79
NUP54-203ENST00000504173 TDRD1Q9BXT4 1180 aaKnown RBP10.09□□□□□ -0.79
NUP54-203ENST00000504173 BTBD1Q9H0C5 482 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 DUSP15Q9H1R2 295 aaPredicted RBP10.09□□□□□ -0.79
NUP54-203ENST00000504173 SGK2Q9HBY8 427 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 PCDH9Q9HC56 1237 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 GOLGA6AQ9NYA3 693 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 FEZ2Q9UHY8 353 aaPredicted RBP10.09□□□□□ -0.79
NUP54-203ENST00000504173 CHKBQ9Y259 395 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 AAR2Q9Y312 384 aaKnown RBP10.09□□□□□ -0.79
NUP54-203ENST00000504173 MRFAP1Q9Y605 127 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 SPAARA0A1B0GVQ0 90 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 FAM47DPA6NHR8 397 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 LRRC72A6NJI9 287 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 NEMP1O14524 444 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 NDUFS2O75306 463 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 METTL18O95568 372 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 SEMA4FO95754 770 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 KRT14P02533 472 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 PRKCGP05129 697 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 TIMP2P16035 220 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 NFKBIAP25963 317 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 RPL22P35268 128 aaKnown RBP10.08□□□□□ -0.8
NUP54-203ENST00000504173 FDFT1P37268 417 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 ABL2P42684 1182 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 LMAN1P49257 510 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 VPS41P49754 854 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 SUOXP51687 545 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 ADPRHP54922 357 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 POLR2LP62875 67 aaKnown RBP10.08□□□□□ -0.8
NUP54-203ENST00000504173 CDK18Q07002 472 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 TRIP13Q15645 432 aaPredicted RBP10.08□□□□□ -0.8
NUP54-203ENST00000504173 UGP2Q16851 508 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 CCDC70Q6NSX1 233 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 ERAP2Q6P179 960 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 KDELC1Q6UW63 502 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 C4orf22Q6V702 233 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 SLC36A4Q6YBV0 504 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 CCNI2Q6ZMN8 369 aaPredicted RBP10.08□□□□□ -0.8
NUP54-203ENST00000504173 KDELC2Q7Z4H8 507 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 TTC7BQ86TV6 843 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 C11orf74Q86VG3 221 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 NDUFAF2Q8N183 169 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 FRMD1Q8N878 549 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 SPATA4Q8NEY3 305 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 LPCAT1Q8NF37 534 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 IPMKQ8NFU5 416 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 RAB7BQ96AH8 199 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 FAM131CQ96AQ9 280 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 TADA1Q96BN2 335 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 LRRC45Q96CN5 670 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 FEM1CQ96JP0 617 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 KRT12Q99456 494 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 GORASP1Q9BQQ3 440 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 MLPHQ9BV36 600 aaPredicted RBP10.08□□□□□ -0.8
NUP54-203ENST00000504173 FSD1LQ9BXM9 530 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 ADGRE3Q9BY15 652 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 ETNK1Q9HBU6 452 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 PCDH12Q9NPG4 1184 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 RAB6BQ9NRW1 208 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 WSB2Q9NYS7 404 aaPredicted RBP10.08□□□□□ -0.8
NUP54-203ENST00000504173 PCYOX1Q9UHG3 505 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 PHTF1Q9UMS5 762 aa10.08□□□□□ -0.8
NUP54-203ENST00000504173 EML5Q05BV3 1969 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 E7EVH7 732 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 KHNYNO15037 678 aaKnown RBP10.07□□□□□ -0.8
NUP54-203ENST00000504173 PLRG1O43660 514 aaKnown RBP10.07□□□□□ -0.8
NUP54-203ENST00000504173 AP1G1O43747 822 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 FZD6O60353 706 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 RHOBTB1O94844 696 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 PCDH8O95206 1070 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 NDST3O95803 873 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 PDHA1P08559 390 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 CTPS1P17812 591 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 BCKDHBP21953 392 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 ACSL1P33121 698 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 GRIA4P48058 902 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 TAS2R38P59533 333 aa10.07□□□□□ -0.8
NUP54-203ENST00000504173 RPL26P61254 145 aaKnown RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms