RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 RND1Q92730 232 aa5.7□□□□□ -1.5
SF3B1-212ENST00000496458 KLHL29Q96CT2 875 aa5.7□□□□□ -1.5
SF3B1-212ENST00000496458 RNF125Q96EQ8 232 aa5.7□□□□□ -1.5
SF3B1-212ENST00000496458 KXD1Q9BQD3 176 aa5.7□□□□□ -1.5
SF3B1-212ENST00000496458 HAUS8Q9BT25 410 aa5.7□□□□□ -1.5
SF3B1-212ENST00000496458 VPS33BQ9H267 617 aa5.7□□□□□ -1.5
SF3B1-212ENST00000496458 ESRP2Q9H6T0 727 aaKnown RBP5.7□□□□□ -1.5
SF3B1-212ENST00000496458 C17orf75Q9HAS0 396 aa5.7□□□□□ -1.5
SF3B1-212ENST00000496458 VEZTQ9HBM0 779 aa5.7□□□□□ -1.5
SF3B1-212ENST00000496458 TXLNGQ9NUQ3 528 aa5.7□□□□□ -1.5
SF3B1-212ENST00000496458 SIX4Q9UIU6 781 aa5.7□□□□□ -1.5
SF3B1-212ENST00000496458 STON1Q9Y6Q2 735 aa5.7□□□□□ -1.5
SF3B1-212ENST00000496458 TMEM202A6NGA9 273 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 HNRNPCL2B2RXH8 293 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 PRAC2D3DTV9 90 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 TULP2O00295 520 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 SHMT1P34896 483 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 PAFAH1B1P43034 410 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 BRWD1-AS2P59051 145 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 ZNF155Q12901 538 aaPredicted RBP5.69□□□□□ -1.5
SF3B1-212ENST00000496458 BAK1Q16611 211 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 EIF2S3LQ2VIR3 472 aaKnown RBP5.69□□□□□ -1.5
SF3B1-212ENST00000496458 C9orf50Q5SZB4 431 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 SLC9C2Q5TAH2 1124 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 UNQ6126/PRO20091Q6UXV3 157 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 LINGO2Q7L985 606 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 TANKQ92844 425 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 GLIS2Q9BZE0 524 aaPredicted RBP5.69□□□□□ -1.5
SF3B1-212ENST00000496458 TKTL2Q9H0I9 626 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 MKKSQ9NPJ1 570 aaPredicted RBP5.69□□□□□ -1.5
SF3B1-212ENST00000496458 DONSONQ9NYP3 566 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 KCND2Q9NZV8 630 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 MPP6Q9NZW5 540 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 TINAGQ9UJW2 476 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 A4GNTQ9UNA3 340 aa5.69□□□□□ -1.5
SF3B1-212ENST00000496458 A0A087WYN8 130 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 CCDC196A0A1B0GTZ2 297 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 F7P08709 466 aaPredicted RBP5.68□□□□□ -1.5
SF3B1-212ENST00000496458 XBP1P17861 261 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 NLRP5P59047 1200 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 HYAL1Q12794 435 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 ILF3Q12906 894 aaKnown RBP eCLIP5.68□□□□□ -1.5
SF3B1-212ENST00000496458 TMEM95Q3KNT9 176 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 FAM69AQ5T7M9 428 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 HIST2H2BCQ6DN03 193 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 HIST2H2BDQ6DRA6 164 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 ESX1Q8N693 406 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 ZNF441Q8N8Z8 693 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 POC1AQ8NBT0 407 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 SPATA3Q8NHX4 192 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 HUS1BQ8NHY5 278 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 SORCS1Q8WY21 1168 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 ST8SIA4Q92187 359 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 PABPC5Q96DU9 382 aaKnown RBP5.68□□□□□ -1.5
SF3B1-212ENST00000496458 H2AFJQ9BTM1 129 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 SLC25A18Q9H1K4 315 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 PLEKHA4Q9H4M7 779 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 FBXO9Q9UK97 447 aaPredicted RBP5.68□□□□□ -1.5
SF3B1-212ENST00000496458 SARDHQ9UL12 918 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 KCNS2Q9ULS6 477 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 VDAC3Q9Y277 283 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 PCDHAC2Q9Y5I4 1007 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 SCINQ9Y6U3 715 aa5.68□□□□□ -1.5
SF3B1-212ENST00000496458 IGHV4OR15-8A0A075B7B6 117 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 SNAP23O00161 211 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 MID1O15344 667 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 TIPRLO75663 272 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 RFPL2O75678 378 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 KRT36O76013 467 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 IGKV3-20P01619 116 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 SRCP12931 536 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 SORDQ00796 357 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 ZRSR1Q15695 479 aaKnown RBP5.67□□□□□ -1.5
SF3B1-212ENST00000496458 C2orf68Q2NKX9 166 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 PRICKLE4Q2TBC4 344 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 SLC36A4Q6YBV0 504 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 CCNI2Q6ZMN8 369 aaPredicted RBP5.67□□□□□ -1.5
SF3B1-212ENST00000496458 TUBA1AQ71U36 451 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 EXOC3L1Q86VI1 746 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 HEATR4Q86WZ0 1026 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 FOXRED2Q8IWF2 684 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 NAGSQ8N159 534 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 SPATA22Q8NHS9 363 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 WFIKKN2Q8TEU8 576 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 TMEM19Q96HH6 336 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 TUBA1CQ9BQE3 449 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 GPR108Q9NPR9 543 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 C1RLQ9NZP8 487 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 ARHGAP26Q9UNA1 814 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 PSAT1Q9Y617 370 aa5.67□□□□□ -1.5
SF3B1-212ENST00000496458 SCN5AQ14524 2016 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 A0A0G2JPF8 293 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 HNRNPCL3B7ZW38 293 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 SEC14L5O43304 696 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 HNRNPCL1O60812 293 aaKnown RBP5.66□□□□□ -1.5
SF3B1-212ENST00000496458 HNRNPCL4P0DMR1 293 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 ABCD3P28288 659 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 GABRB2P47870 512 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 GNAQP50148 359 aa5.66□□□□□ -1.5
SF3B1-212ENST00000496458 TUBP50607 506 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms