RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 RSPH14Q9UHP6 348 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 DNPEPQ9ULA0 475 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 R3HDM2Q9Y2K5 976 aaKnown RBP16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CACNA1EQ15878 2313 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CAPN8A6NHC0 703 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PSMD11O00231 422 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TM4SF5O14894 197 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 KCNN4O15554 427 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 RECQL5O94762 991 aaPredicted RBP16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 STK10O94804 968 aaKnown RBP16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 MT-CYBP00156 380 aaPredicted RBP16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 HNF1BP35680 557 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PFN3P60673 137 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SLC14A1Q13336 389 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ACOX1Q15067 660 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PTPRRQ15256 657 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PCSK7Q16549 785 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 WSCD2Q2TBF2 565 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 LRRK1Q38SD2 2015 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TSPAN33Q86UF1 283 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 DCP2Q8IU60 420 aaKnown RBP16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SLC22A18ASQ8N1D0 253 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TMEM131Q92545 1883 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 COQ10AQ96MF6 247 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 FCRL5Q96RD9 977 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TRIB3Q96RU7 358 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 GBA3Q9H227 469 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ERVMER34-1Q9H9K5 563 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 GPR27Q9NS67 375 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TRMT1Q9NXH9 659 aaKnown RBP16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 FAM153AQ9UHL3 310 aa16.32■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 A0A1B0GTQ1 180 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 F5H423 210 aaPredicted RBP16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TOR1BO14657 336 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 YKT6O15498 198 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PMPCBO75439 489 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PCCBP05166 539 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CD59P13987 128 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ZNF30P17039 623 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 GM2AP17900 193 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CDK18Q07002 472 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 GALNT3Q14435 633 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 QPCTQ16769 361 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 LRRC66Q68CR7 880 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 DENND2CQ68D51 928 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ITPRIPL1Q6GPH6 555 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CRTC1Q6UUV9 634 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 KDELC2Q7Z4H8 507 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SLC35B2Q8TB61 432 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 NUS1Q96E22 293 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 IFT43Q96FT9 208 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SMIM14Q96QK8 99 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 MLPHQ9BV36 600 aaPredicted RBP16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 FRMD8P1Q9BZ68 369 aaPredicted RBP16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 USP29Q9HBJ7 922 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 UBP1Q9NZI7 540 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 JRKLQ9Y4A0 524 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PCDHGB2Q9Y5G2 931 aa16.31■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 DCDC2BA2VCK2 349 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ANKRD66B4E2M5 251 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ARRB1P49407 418 aaPredicted RBP16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 YPEL5P62699 121 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 IL9RQ01113 521 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 MTM1Q13496 603 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PDE1CQ14123 709 aaPredicted RBP16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ZNF569Q5MCW4 686 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ANKRD20A2Q5SQ80 823 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PRAMEF14Q5SWL7 426 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ANKRD20A1Q5TYW2 823 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ANKRD20A3Q5VUR7 823 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 KDELC1Q6UW63 502 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 KDM7AQ6ZMT4 941 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 HSD11B1LQ7Z5J1 315 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SPATA13Q96N96 652 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 LYSMD1Q96S90 227 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 KCTD5Q9NXV2 234 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PYCARDQ9ULZ3 195 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CFAP54Q96N23 3096 aa16.3■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 A0A0U1RQS6 177 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 GOLGA8CPA6NN73 597 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ENC1O14682 589 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 LIASO43766 372 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 KIF5CO60282 957 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 NDST3O95803 873 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 C1SP09871 688 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 MSNP26038 577 aaKnown RBP16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CXCR5P32302 372 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TNNT3P45378 269 aaPredicted RBP16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 RXRGP48443 463 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 GEMP55040 296 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 WNT3AP56704 352 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 MPP3Q13368 585 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SUZ12Q15022 739 aaKnown RBP16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SHBQ15464 509 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CCDC70Q6NSX1 233 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 PIP4P1Q86T03 277 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 NAXDQ8IW45 347 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CBARPQ8N350 705 aaPredicted RBP16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SLC35F6Q8N357 371 aa16.29■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CCDC110Q8TBZ0 833 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms