RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 RALGPS1Q5JS13 557 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 ARMC12Q5T9G4 340 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 DENND2CQ68D51 928 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 DHRS13Q6UX07 377 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 KATNAL2Q8IYT4 538 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 GATA6Q92908 595 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 HAUS1Q96CS2 278 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 IFT43Q96FT9 208 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 MCCC1Q96RQ3 725 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-214ENST00000490398 APOOQ9BUR5 198 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 C1QTNF7Q9BXJ2 289 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 TDRD1Q9BXT4 1180 aaKnown RBP18.18■□□□□ 0.5
COL9A3-214ENST00000490398 PHTF1Q9UMS5 762 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 CHKBQ9Y259 395 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 NEUROG3Q9Y4Z2 214 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 EPG5Q9HCE0 2579 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 ZZEF1O43149 2961 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 hCG_1818297A0A087WSY0 165 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 LY6G6EA0A0G2JKS1 128 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 FAM221BA6H8Z2 402 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 PJA2O43164 708 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 CST8O60676 142 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 GCATO75600 419 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 ETV3P41162 512 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 VAV2P52735 878 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 THOP1P52888 689 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 YPEL5P62699 121 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 SKOR1P84550 965 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 ACOX1Q15067 660 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 TCEA2Q15560 299 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 MACC1Q6ZN28 852 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 DAAM2Q86T65 1068 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 OR4C6Q8NH72 309 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 LMX1AQ8TE12 382 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 TSACCQ96A04 125 aaPredicted RBP18.17■□□□□ 0.5
COL9A3-214ENST00000490398 SCRN2Q96FV2 425 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 ZNF830Q96NB3 372 aaPredicted RBP18.17■□□□□ 0.5
COL9A3-214ENST00000490398 PPIL1Q9Y3C6 166 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 U3KQA8 63 aa18.17■□□□□ 0.5
COL9A3-214ENST00000490398 COL5A1P20908 1838 aaPredicted RBP18.16■□□□□ 0.5
COL9A3-214ENST00000490398 GRID2IPA4D2P6 1211 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 FAM149AA5PLN7 773 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 CD86P42081 329 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 HNRNPKP61978 463 aaKnown RBP eCLIP18.16■□□□□ 0.5
COL9A3-214ENST00000490398 ZNF211Q13398 564 aaPredicted RBP18.16■□□□□ 0.5
COL9A3-214ENST00000490398 PDK1Q15118 436 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 ALG11Q2TAA5 492 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 ODF2Q5BJF6 829 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 AADACL2Q6P093 401 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 CRTC1Q6UUV9 634 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 Q6ZVL8 140 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 PHACTR4Q8IZ21 702 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 AGAP3Q96P47 875 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 LRRC61Q9BV99 259 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 LGR4Q9BXB1 951 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 HEMGNQ9BXL5 484 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 CLPBQ9H078 707 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 BRD8Q9H0E9 1235 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 SEPT10Q9P0V9 454 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 IMPACTQ9P2X3 320 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 MSRB2Q9Y3D2 182 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 IGF2RP11717 2491 aa18.16■□□□□ 0.5
COL9A3-214ENST00000490398 MAP1BP46821 2468 aaKnown RBP18.16■□□□□ 0.5
COL9A3-214ENST00000490398 A0A0J9YYE9 177 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 A0A1W2PQ67 120 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 TMEM202A6NGA9 273 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 BTNL10A8MVZ5 291 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 ZRANB2O95218 330 aaKnown RBP eCLIP18.15■□□□□ 0.5
COL9A3-214ENST00000490398 TRBC1P01850 177 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 ZFXP17010 805 aaPredicted RBP18.15■□□□□ 0.5
COL9A3-214ENST00000490398 CKMT2P17540 419 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 MTM1Q13496 603 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 PTK2BQ14289 1009 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 NFATC4Q14934 902 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 PRKD1Q15139 912 aaPredicted RBP18.15■□□□□ 0.5
COL9A3-214ENST00000490398 DEFB133Q30KQ1 61 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 ENPP7Q6UWV6 458 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 LRRC57Q8N9N7 239 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 LPCAT1Q8NF37 534 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 RBM15Q96T37 977 aaKnown RBP eCLIP18.15■□□□□ 0.5
COL9A3-214ENST00000490398 C10orf88Q9H8K7 445 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 LUC7LQ9NQ29 371 aaKnown RBP18.15■□□□□ 0.5
COL9A3-214ENST00000490398 APOBEC3BQ9UH17 382 aaKnown RBP18.15■□□□□ 0.5
COL9A3-214ENST00000490398 AMACRQ9UHK6 382 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 DMXL2Q8TDJ6 3036 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 CELSR3Q9NYQ7 3312 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 USP24Q9UPU5 2620 aa18.15■□□□□ 0.5
COL9A3-214ENST00000490398 AQP9O43315 295 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 C1SP09871 688 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 CTNNA1P35221 906 aaKnown RBP18.14■□□□□ 0.49
COL9A3-214ENST00000490398 PEX5P50542 639 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 NAP1L1P55209 391 aaKnown RBP18.14■□□□□ 0.49
COL9A3-214ENST00000490398 PTSQ03393 145 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 WASHC5Q12768 1159 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 PRRT3Q5FWE3 981 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 FAXCQ5TGI0 409 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 LRRC66Q68CR7 880 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 PNCKQ6P2M8 343 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 UNQ6494/PRO21346Q6UXR6 183 aa18.14■□□□□ 0.49
COL9A3-214ENST00000490398 CCNI2Q6ZMN8 369 aaPredicted RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms