RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 INCA1Q0VD86 236 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 UBAP2LQ14157 1087 aaKnown RBP11.06□□□□□ -0.64
HDAC6-228ENST00000486227 LPCAT4Q643R3 524 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 TRMT10BQ6PF06 316 aaKnown RBP11.06□□□□□ -0.64
HDAC6-228ENST00000486227 GET4Q7L5D6 327 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-228ENST00000486227 CYP4X1Q8N118 509 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 DACT3Q96B18 629 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-228ENST00000486227 VPS50Q96JG6 964 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 PANX3Q96QZ0 392 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 ATP13A3Q9H7F0 1226 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 PARVBQ9HBI1 364 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 RNF186Q9NXI6 227 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 AKAP7Q9P0M2 348 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-228ENST00000486227 POLG2Q9UHN1 485 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 ZMPSTE24O75844 475 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 C1RP00736 705 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 HNRNPLP14866 589 aaKnown RBP eCLIP11.06□□□□□ -0.64
HDAC6-228ENST00000486227 SYN1P17600 705 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 PGS1Q32NB8 556 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 FAM46CQ5VWP2 391 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 TTC7BQ86TV6 843 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 TIAM2Q8IVF5 1701 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 SYTL1Q8IYJ3 562 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 OR7D4Q8NG98 312 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 MCOLN3Q8TDD5 553 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 ZNF296Q8WUU4 475 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-228ENST00000486227 RIPOR3Q96MK2 946 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 CCDC3Q9BQI4 270 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 PSMD13Q9UNM6 376 aa11.06□□□□□ -0.64
HDAC6-228ENST00000486227 GNG14A0A1W2PPG7 69 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 TCRBV7S3A2A0A539 114 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 SAC3D1A6NKF1 404 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 COX4I1P13073 169 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 USP4Q13107 963 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 LPIN1Q14693 890 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 AFTPHQ6ULP2 937 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 PIWIL4Q7Z3Z4 852 aaKnown RBP11.05□□□□□ -0.64
HDAC6-228ENST00000486227 NKAPQ8N5F7 415 aaKnown RBP11.05□□□□□ -0.64
HDAC6-228ENST00000486227 OR4L1Q8NH43 312 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 CXorf40AQ8TE69 158 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 MED8Q96G25 268 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 TCF25Q9BQ70 676 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 MRPL57Q9BQC6 102 aaKnown RBP11.05□□□□□ -0.64
HDAC6-228ENST00000486227 EVA1BQ9NVM1 165 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 CROTQ9UKG9 612 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 PRPF19Q9UMS4 504 aaKnown RBP11.05□□□□□ -0.64
HDAC6-228ENST00000486227 CCL22O00626 93 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 CD3EAPO15446 510 aaKnown RBP11.05□□□□□ -0.64
HDAC6-228ENST00000486227 CLOCKO15516 846 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 TBX18O95935 607 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 PCNAP12004 261 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 TTPAP49638 278 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 YBEYP58557 167 aaPredicted RBP11.05□□□□□ -0.64
HDAC6-228ENST00000486227 SLC25A11Q02978 314 aaKnown RBP11.05□□□□□ -0.64
HDAC6-228ENST00000486227 CDC16Q13042 620 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 FBXW8Q8N3Y1 598 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 BHLHE22Q8NFJ8 381 aaPredicted RBP11.05□□□□□ -0.64
HDAC6-228ENST00000486227 SEC14L1Q92503 715 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 SLCO2A1Q92959 643 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 MAGED4Q96JG8 741 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 C7orf26Q96N11 449 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 HAPLN2Q9GZV7 340 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 PDLIM7Q9NR12 457 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 PNPOQ9NVS9 261 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 GDAP2Q9NXN4 497 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 ARL15Q9NXU5 204 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 DEC1Q9P2X7 70 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 GABRQQ9UN88 632 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 INSL6Q9Y581 213 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 MYH11P35749 1972 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 ABHD14A-ACY1A0A1B0GW23 586 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 HDAC3O15379 428 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 ZSCAN9O15535 394 aaPredicted RBP11.05□□□□□ -0.64
HDAC6-228ENST00000486227 TRMUO75648 421 aaKnown RBP11.05□□□□□ -0.64
HDAC6-228ENST00000486227 IL1BP01584 269 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 CYP2A7P20853 494 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 FASP25445 335 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 SLC18A1P54219 525 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 PKNOX1P55347 436 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 C15orf39Q6ZRI6 1047 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 MIER2Q8N344 545 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 DPY30Q9C005 99 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 CFAP97Q9P2B7 532 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 NDUFAF1Q9Y375 327 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 MYH10P35580 1976 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 CHD4Q14839 1912 aa11.05□□□□□ -0.64
HDAC6-228ENST00000486227 IGKV6-21A0A0C4DH24 114 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 MGAT4DA6NG13 374 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 NRP1O14786 923 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 MATN3O15232 486 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CDH2P19022 906 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 EPHA3P29320 983 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CDH13P55290 713 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 PFKPQ01813 784 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CRY1Q16526 586 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 PARP15Q460N3 678 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 TBCELQ5QJ74 424 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 LINGO4Q6UY18 593 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 ANKS1BQ7Z6G8 1248 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 ADCY4Q8NFM4 1077 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms