RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MAML2Q8IZL2 1156 aaPredicted RBP12.27□□□□□ -0.45
SDC1-206ENST00000482879 PDIK1LQ8N165 341 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 ZCCHC9Q8N567 271 aaKnown RBP12.27□□□□□ -0.45
SDC1-206ENST00000482879 BRSK1Q8TDC3 778 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 CXorf40AQ8TE69 158 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 LYSMD1Q96S90 227 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 GPR63Q9BZJ6 419 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 FAM129AQ9BZQ8 928 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 TRABDQ9H4I3 376 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 SGK2Q9HBY8 427 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 ZDHHC18Q9NUE0 388 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 GGT7Q9UJ14 662 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 INVSQ9Y283 1065 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 ZNF711Q9Y462 761 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 MUC3AQ02505 3323 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TBC1D3DA0A087WVF3 549 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TBC1D3IA0A087WXS9 549 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TBC1D3EA0A087X179 549 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TBC1D3KA0A087X1G2 549 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 IGHV1OR15-9A0A0B4J2B8 117 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 CCDC163A0A0D9SF12 145 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 C1orf232A0A0U1RR37 186 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TBC1D3FA6NER0 549 aaPredicted RBP12.26□□□□□ -0.45
SDC1-206ENST00000482879 PRR23AA6NEV1 266 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 FAM47DPA6NHR8 397 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 LRRC72A6NJI9 287 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 SDR42E2A6NKP2 422 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TBC1D3LB9A6J9 549 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TSPAN6O43657 245 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 MMP20O60882 483 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 PPFIA2O75334 1257 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 CLDN7O95471 211 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 CRTAMO95727 393 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 SLC4A1P02730 911 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TBC1D3HP0C7X1 549 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TDGF1P13385 188 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 LHCGRP22888 699 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 CD6P30203 668 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 ACSL1P33121 698 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 MAGEA3P43357 314 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 ADPRHP54922 357 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 CRADDP78560 199 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 DHX9Q08211 1270 aaKnown RBP12.26□□□□□ -0.45
SDC1-206ENST00000482879 RALGDSQ12967 914 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TAF1AQ15573 450 aaPredicted RBP12.26□□□□□ -0.45
SDC1-206ENST00000482879 HIF1AQ16665 826 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 CDKN3Q16667 212 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 MAP7D1Q3KQU3 841 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 BBS9Q3SYG4 887 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 CCDC38Q502W7 563 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 USP39Q53GS9 565 aaKnown RBP12.26□□□□□ -0.45
SDC1-206ENST00000482879 LRRC66Q68CR7 880 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TBC1D3GQ6DHY5 549 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TBC1D3CQ6IPX1 549 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 LYSMD3Q7Z3D4 306 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 GLT6D1Q7Z4J2 308 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TBC1D3Q8IZP1 549 aaPredicted RBP12.26□□□□□ -0.45
SDC1-206ENST00000482879 RUBCNQ92622 972 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 TOE1Q96GM8 510 aaKnown RBP12.26□□□□□ -0.45
SDC1-206ENST00000482879 WRAP53Q9BUR4 548 aaKnown RBP12.26□□□□□ -0.45
SDC1-206ENST00000482879 FOXP3Q9BZS1 431 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 IL22Q9GZX6 179 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 KDM4CQ9H3R0 1056 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 ZFYVE1Q9HBF4 777 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 SYBUQ9NX95 663 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 WSB2Q9NYS7 404 aaPredicted RBP12.26□□□□□ -0.45
SDC1-206ENST00000482879 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.26□□□□□ -0.45
SDC1-206ENST00000482879 MTRF1LQ9UGC7 380 aaKnown RBP12.26□□□□□ -0.45
SDC1-206ENST00000482879 FBXO4Q9UKT5 387 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 NFU1Q9UMS0 254 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 ZNF318Q5VUA4 2279 aa12.26□□□□□ -0.45
SDC1-206ENST00000482879 SCN8AQ9UQD0 1980 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 HEATR9A2RTY3 570 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 C2orf81A6NN90 581 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 AURKAO14965 403 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 RNGTTO60942 597 aaKnown RBP12.25□□□□□ -0.45
SDC1-206ENST00000482879 NDUFS2O75306 463 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 SEMA4FO95754 770 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 ELFN1P0C7U0 828 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 ZNF30P17039 623 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 LPOP22079 712 aaPredicted RBP12.25□□□□□ -0.45
SDC1-206ENST00000482879 ADRA1DP25100 572 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 LIG3P49916 1009 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 PTSQ03393 145 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 PDIA2Q13087 525 aaKnown RBP12.25□□□□□ -0.45
SDC1-206ENST00000482879 LAMB3Q13751 1172 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 NAA30Q147X3 362 aaPredicted RBP12.25□□□□□ -0.45
SDC1-206ENST00000482879 CNGA3Q16281 694 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 MSS51Q4VC12 460 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 PCID2Q5JVF3 399 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 NEK5Q6P3R8 708 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 CASC4Q6P4E1 433 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 LIPIQ6XZB0 460 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 CENPUQ71F23 418 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 TMC3Q7Z5M5 1100 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 WDR5BQ86VZ2 330 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 LONP2Q86WA8 852 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 CCDC25Q86WR0 208 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 MPP5Q8N3R9 675 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 TTC30BQ8N4P2 665 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms