RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 CDH16O75309 829 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 RPP40O75818 363 aaKnown RBP10.19□□□□□ -0.78
USP39-215ENST00000481409 CTSLP07711 333 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 HOXB2P14652 356 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 TPH1P17752 444 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 SSTR1P30872 391 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 VIPR1P32241 457 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 PPARGP37231 505 aaPredicted RBP10.19□□□□□ -0.78
USP39-215ENST00000481409 NEK3P51956 506 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 OLIG2Q13516 323 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 ARHGEF7Q14155 803 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 NAIF1Q69YI7 327 aaPredicted RBP10.19□□□□□ -0.78
USP39-215ENST00000481409 USP30Q70CQ3 517 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 ERN2Q76MJ5 926 aaKnown RBP10.19□□□□□ -0.78
USP39-215ENST00000481409 TAOK1Q7L7X3 1001 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 KBTBD6Q86V97 674 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 LRRC6Q86X45 466 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 IGDCC3Q8IVU1 814 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 CNTN4Q8IWV2 1026 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 STK40Q8N2I9 435 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 MPP5Q8N3R9 675 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 OR6K2Q8NGY2 324 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 BLOC1S5Q8TDH9 187 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 EZH1Q92800 747 aaPredicted RBP10.19□□□□□ -0.78
USP39-215ENST00000481409 FAM131CQ96AQ9 280 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 ZNF669Q96BR6 464 aaPredicted RBP10.19□□□□□ -0.78
USP39-215ENST00000481409 CERS2Q96G23 380 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 GPR63Q9BZJ6 419 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 KDM4CQ9H3R0 1056 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 MFSD1Q9H3U5 465 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 MED4Q9NPJ6 270 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 CACNA2D2Q9NY47 1150 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 NFKBIL1Q9UBC1 381 aaPredicted RBP10.19□□□□□ -0.78
USP39-215ENST00000481409 RABGEF1Q9UJ41 708 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 APPL1Q9UKG1 709 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 FBXL21Q9UKT6 434 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 MMP17Q9ULZ9 603 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 VPS9D1Q9Y2B5 631 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 ZNF711Q9Y462 761 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 NFS1Q9Y697 457 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.19□□□□□ -0.78
USP39-215ENST00000481409 IKBKGQ9Y6K9 419 aa10.19□□□□□ -0.78
USP39-215ENST00000481409 SHISA7A6NL88 538 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 KPNA3O00505 521 aaPredicted RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 RASGRF2O14827 1237 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 STX7O15400 261 aaKnown RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 RNF40O75150 1001 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 BANF1O75531 89 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 KLF8O95600 359 aaPredicted RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 MYZAPP0CAP1 466 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 CHRNB1P11230 501 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 HLA-EP13747 358 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 TIMP2P16035 220 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 HNF1BP35680 557 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 RPS9P46781 194 aaKnown RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 POLD2P49005 469 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 SERPINB9P50453 376 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 DGKEP52429 567 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 ZNF140P52738 457 aaPredicted RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 CSE1LP55060 971 aaKnown RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 DCDC1P59894 354 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 PRAMEP78395 509 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 SATB1Q01826 763 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 DNAJC3Q13217 504 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 THOC5Q13769 683 aaKnown RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 SEPT6Q14141 434 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 CST6Q15828 149 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 CDKN3Q16667 212 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 TTC31Q49AM3 519 aaPredicted RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 C2orf27AQ580R0 203 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 AARS2Q5JTZ9 985 aaKnown RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 EMC10Q5UCC4 262 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 LYPLAL1Q5VWZ2 237 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 FBXL19Q6PCT2 694 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 AFTPHQ6ULP2 937 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 MARK2Q7KZI7 788 aaKnown RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 DPPA4Q7L190 304 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 SYT13Q7L8C5 426 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 TTC7BQ86TV6 843 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 KCNMB4Q86W47 210 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 NRSN1Q8IZ57 195 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 GJD3Q8N144 294 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 ZNF687Q8N1G0 1237 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 TTC30BQ8N4P2 665 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 TXNDC5Q8NBS9 432 aaKnown RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 MDGA1Q8NFP4 955 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 GPR150Q8NGU9 434 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 GRIN3AQ8TCU5 1115 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 FBF1Q8TES7 1133 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 MFSD3Q96ES6 412 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 PGM2Q96G03 612 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 CFAP36Q96G28 342 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 ZIM3Q96PE6 472 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 PLEKHG4BQ96PX9 1271 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 TCF12Q99081 682 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 ACOX2Q99424 681 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 TTC1Q99614 292 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 POLMQ9NP87 494 aaPredicted RBP10.18□□□□□ -0.78
USP39-215ENST00000481409 LTB4R2Q9NPC1 389 aa10.18□□□□□ -0.78
USP39-215ENST00000481409 PRDM6Q9NQX0 595 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms