RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 RXFP2Q8WXD0 754 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 CPA5Q8WXQ8 436 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 SLC45A3Q96JT2 553 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 ZNF641Q96N77 438 aaPredicted RBP17.24■□□□□ 0.35
VIM-204ENST00000478746 DDA1Q9BW61 102 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 LGR4Q9BXB1 951 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 NOL6Q9H6R4 1146 aaKnown RBP17.24■□□□□ 0.35
VIM-204ENST00000478746 METTL5Q9NRN9 209 aaKnown RBP17.24■□□□□ 0.35
VIM-204ENST00000478746 LHX3Q9UBR4 397 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 NEU3Q9UQ49 428 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 ATP8A1Q9Y2Q0 1164 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 MYO9AB2RTY4 2548 aa17.24■□□□□ 0.35
VIM-204ENST00000478746 PRSS38A1L453 326 aa17.23■□□□□ 0.35
VIM-204ENST00000478746 PDE2AO00408 941 aaPredicted RBP17.23■□□□□ 0.35
VIM-204ENST00000478746 BUB1BO60566 1050 aaPredicted RBP17.23■□□□□ 0.35
VIM-204ENST00000478746 PRKAR1AP10644 381 aa17.23■□□□□ 0.35
VIM-204ENST00000478746 CCNB1P14635 433 aa17.23■□□□□ 0.35
VIM-204ENST00000478746 YBEYP58557 167 aaPredicted RBP17.23■□□□□ 0.35
VIM-204ENST00000478746 NR1D2Q14995 579 aa17.23■□□□□ 0.35
VIM-204ENST00000478746 CCDC14Q49A88 953 aa17.23■□□□□ 0.35
VIM-204ENST00000478746 DCAF12Q5T6F0 453 aa17.23■□□□□ 0.35
VIM-204ENST00000478746 CAMK1DQ8IU85 385 aa17.23■□□□□ 0.35
VIM-204ENST00000478746 OR4D9Q8NGE8 314 aa17.23■□□□□ 0.35
VIM-204ENST00000478746 ABHD17AQ96GS6 310 aa17.23■□□□□ 0.35
VIM-204ENST00000478746 SPTBN1Q01082 2364 aaKnown RBP17.23■□□□□ 0.35
VIM-204ENST00000478746 RASA4BC9J798 803 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 TEX33O43247 280 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 RASA4O43374 803 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 ECEL1O95672 775 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 LSM8O95777 96 aaKnown RBP17.22■□□□□ 0.35
VIM-204ENST00000478746 MPSTP25325 297 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 SDC4P31431 198 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 NKAIN2Q5VXU1 208 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 PNCKQ6P2M8 343 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 LIPIQ6XZB0 460 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 PHLDB2Q86SQ0 1253 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 ATCAYQ86WG3 371 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 NRROSQ86YC3 692 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 NRSN1Q8IZ57 195 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 CCDC185Q8N715 623 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 RTL3Q8N8U3 475 aaKnown RBP17.22■□□□□ 0.35
VIM-204ENST00000478746 APOBEC4Q8WW27 367 aaKnown RBP17.22■□□□□ 0.35
VIM-204ENST00000478746 KIAA1143Q96AT1 154 aaPredicted RBP17.22■□□□□ 0.35
VIM-204ENST00000478746 GSDMCQ9BYG8 508 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 WDR26Q9H7D7 661 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 SUDS3Q9H7L9 328 aaPredicted RBP17.22■□□□□ 0.35
VIM-204ENST00000478746 GPN2Q9H9Y4 310 aaPredicted RBP17.22■□□□□ 0.35
VIM-204ENST00000478746 CARS2Q9HA77 564 aaKnown RBP17.22■□□□□ 0.35
VIM-204ENST00000478746 OCIAD1Q9NX40 245 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 TAAR2Q9P1P5 351 aa17.22■□□□□ 0.35
VIM-204ENST00000478746 ICE1Q9Y2F5 2266 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 DUX1O43812 170 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 ELFN1P0C7U0 828 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 EPHB2P29323 1055 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 MTIF2P46199 727 aaKnown RBP17.21■□□□□ 0.35
VIM-204ENST00000478746 ILF3Q12906 894 aaKnown RBP eCLIP17.21■□□□□ 0.35
VIM-204ENST00000478746 SQSTM1Q13501 440 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 RAPGEF1Q13905 1077 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 DEFB109BQ30KR1 87 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 LACTB2Q53H82 288 aaPredicted RBP17.21■□□□□ 0.35
VIM-204ENST00000478746 NAA35Q5VZE5 725 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 STRADAQ7RTN6 431 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 ZSWIM9Q86XI8 627 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 FAM129CQ86XR2 697 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 GPT2Q8TD30 523 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 MIB2Q96AX9 1013 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 TUBGCP5Q96RT8 1024 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 DPYSL5Q9BPU6 564 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 EFHD1Q9BUP0 239 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 UBA2Q9UBT2 640 aaPredicted RBP17.21■□□□□ 0.35
VIM-204ENST00000478746 PILRAQ9UKJ1 303 aa17.21■□□□□ 0.35
VIM-204ENST00000478746 NBPF19A0A087WUL8 3843 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 EFCAB7A8K855 629 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 B4E171 279 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 MTSS1O43312 755 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 MAP4P27816 1152 aaKnown RBP17.2■□□□□ 0.34
VIM-204ENST00000478746 TSPAN7P41732 249 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 RAB15P59190 212 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 NOMO3P69849 1222 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 CDC20Q12834 499 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 KLRB1Q12918 225 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 RALGDSQ12967 914 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 SEPT6Q14141 434 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 PARP15Q460N3 678 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 ANKS6Q68DC2 871 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 HIST2H2BCQ6DN03 193 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 NLGN4XQ8N0W4 816 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 PYROXD2Q8N2H3 581 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 NLGN4YQ8NFZ3 816 aaPredicted RBP17.2■□□□□ 0.34
VIM-204ENST00000478746 CENPIQ92674 756 aaPredicted RBP17.2■□□□□ 0.34
VIM-204ENST00000478746 ATP13A3Q9H7F0 1226 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 RWDD2AQ9UIY3 292 aa17.2■□□□□ 0.34
VIM-204ENST00000478746 IGHV1OR21-1A0A087WYE8 117 aa17.19■□□□□ 0.34
VIM-204ENST00000478746 LOC101059948A0A1B0GTJ6 334 aa17.19■□□□□ 0.34
VIM-204ENST00000478746 PRR19A6NJB7 356 aa17.19■□□□□ 0.34
VIM-204ENST00000478746 C2CD4BA6NLJ0 364 aa17.19■□□□□ 0.34
VIM-204ENST00000478746 PPM1DO15297 605 aa17.19■□□□□ 0.34
VIM-204ENST00000478746 MMEP08473 750 aa17.19■□□□□ 0.34
VIM-204ENST00000478746 THRAP10827 490 aa17.19■□□□□ 0.34
VIM-204ENST00000478746 AK4P27144 223 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms