RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 IL10RBQ08334 325 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 TCEAL1Q15170 157 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 TMEM52BQ4KMG9 183 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 ANKRD20A8PQ5CZ79 823 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 BROXQ5VW32 411 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 GUSBP11Q6P575 273 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 FOXR1Q6PIV2 292 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 DAAM2Q86T65 1068 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 ATPAF2Q8N5M1 289 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 TP53I13Q8NBR0 393 aaPredicted RBP15.21■□□□□ 0.03
VARS-223ENST00000474643 ZNF670Q9BS34 389 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 LRRC61Q9BV99 259 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 CAAP1Q9H8G2 361 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 PDFQ9HBH1 243 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 ETNK2Q9NVF9 386 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 WDR70Q9NW82 654 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 DDX56Q9NY93 547 aaKnown RBP15.21■□□□□ 0.03
VARS-223ENST00000474643 SIRPGQ9P1W8 387 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 KLF15Q9UIH9 416 aa15.21■□□□□ 0.03
VARS-223ENST00000474643 URB1O60287 2271 aaKnown RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 LMO7DNF2Z398 122 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 CACNB4O00305 520 aaPredicted RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 PRKCGP05129 697 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 PTMAP06454 111 aaKnown RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 TSHRP16473 764 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 KELP23276 732 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 KDELR1P24390 212 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 RBMS1P29558 406 aaKnown RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 MMP12P39900 470 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 EIF2S3P41091 472 aaKnown RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 PEX5P50542 639 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 HADHBP55084 474 aaKnown RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 PCBP4P57723 403 aaKnown RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 AP1S1P61966 158 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 KIF5AQ12840 1032 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 COL9A2Q14055 689 aaPredicted RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 INPP5AQ14642 412 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 TBC1D25Q3MII6 688 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 TPRG1LQ5T0D9 272 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 C6orf132Q5T0Z8 1188 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 TMCO4Q5TGY1 634 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 RBM44Q6ZP01 1051 aaKnown RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 GKN2Q86XP6 184 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 ARHGAP12Q8IWW6 846 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 WDR48Q8TAF3 677 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 TSACCQ96A04 125 aaPredicted RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 NAF1Q96HR8 494 aaKnown RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 CALR3Q96L12 384 aaKnown RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 ZNF830Q96NB3 372 aaPredicted RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 DESI2Q9BSY9 194 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 TCEAL2Q9H3H9 227 aaPredicted RBP15.2■□□□□ 0.02
VARS-223ENST00000474643 MOSPD1Q9UJG1 213 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.2■□□□□ 0.02
VARS-223ENST00000474643 OR1A2Q9Y585 309 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 ALG6Q9Y672 507 aa15.2■□□□□ 0.02
VARS-223ENST00000474643 KNTC1P50748 2209 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.19■□□□□ 0.02
VARS-223ENST00000474643 TSPAN11A1L157 253 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 GOLGA6CA6NDK9 693 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 GOLGA6BA6NDN3 693 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 TLX3O43711 291 aaPredicted RBP15.19■□□□□ 0.02
VARS-223ENST00000474643 GOLGA6DP0CG33 693 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 GIMD1P0DJR0 217 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 ITPKBP27987 946 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 CSNK1DP48730 415 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 ARSEP51690 589 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 HK3P52790 923 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 MTM1Q13496 603 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 SPIDRQ14159 915 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 LBRQ14739 615 aaKnown RBP15.19■□□□□ 0.02
VARS-223ENST00000474643 NFATC4Q14934 902 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 ACOX1Q15067 660 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 IFI16Q16666 785 aaKnown RBP15.19■□□□□ 0.02
VARS-223ENST00000474643 WSCD2Q2TBF2 565 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 C3orf38Q5JPI3 329 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 LRRC38Q5VT99 294 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 AFMIDQ63HM1 303 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 ARHGAP36Q6ZRI8 547 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 RFX6Q8HWS3 928 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 TP53INP2Q8IXH6 220 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 ZNF248Q8NDW4 579 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 SNIP1Q8TAD8 396 aaKnown RBP15.19■□□□□ 0.02
VARS-223ENST00000474643 FAM71BQ8TC56 605 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 RAPGEF5Q92565 580 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 RNF25Q96BH1 459 aaPredicted RBP15.19■□□□□ 0.02
VARS-223ENST00000474643 TBATAQ96M53 351 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 WDR92Q96MX6 357 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 FCRL3Q96P31 734 aaPredicted RBP15.19■□□□□ 0.02
VARS-223ENST00000474643 APOOQ9BUR5 198 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 GOLPH3Q9H4A6 298 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 POLR1BQ9H9Y6 1135 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 THSD1Q9NS62 852 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 GOLGA6AQ9NYA3 693 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 REXO2Q9Y3B8 237 aaKnown RBP15.19■□□□□ 0.02
VARS-223ENST00000474643 ANKRD36A6QL64 1941 aa15.19■□□□□ 0.02
VARS-223ENST00000474643 RCCD1A6NED2 376 aa15.18■□□□□ 0.02
VARS-223ENST00000474643 A8MX80 341 aa15.18■□□□□ 0.02
VARS-223ENST00000474643 PSTPIP1O43586 416 aa15.18■□□□□ 0.02
VARS-223ENST00000474643 MFSD11O43934 449 aa15.18■□□□□ 0.02
VARS-223ENST00000474643 GCATO75600 419 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms