RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, human

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKS1B-206	ENST00000474215	PCCB	P05166	539 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	PDHA1	P08559	390 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	HOXC4	P09017	264 aa	Predicted RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	CYP2A6	P11509	494 aa	Predicted RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	MYF5	P13349	255 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	KRT10	P13645	584 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	TNNT1	P13805	278 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	ZFX	P17010	805 aa	Predicted RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	TRIM23	P36406	574 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	HK3	P52790	923 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	CLDN6	P56747	220 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	SRP54	P61011	504 aa	Known RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	DSC2	Q02487	901 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	PPID	Q08752	370 aa	Known RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	C1orf61	Q13536	156 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	IHH	Q14623	411 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	PTPRR	Q15256	657 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	CNGA3	Q16281	694 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	ALG11	Q2TAA5	492 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	SLC9A4	Q6AI14	798 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	ALG1L	Q6GMV1	187 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	PNCK	Q6P2M8	343 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	ENPP7	Q6UWV6	458 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	USP45	Q70EL2	814 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	HID1	Q8IV36	788 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	CCDC13	Q8IYE1	715 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	NDUFAF2	Q8N183	169 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	PLD5	Q8N7P1	536 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	PDCD7	Q8N8D1	485 aa	Known RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	ARRDC2	Q8TBH0	407 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	LRRN4	Q8WUT4	740 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	PIH1D2	Q8WWB5	315 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	TSACC	Q96A04	125 aa	Predicted RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	FUBP1	Q96AE4	644 aa	Known RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	RNF25	Q96BH1	459 aa	Predicted RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	WDR92	Q96MX6	357 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	MCCC1	Q96RQ3	725 aa	Predicted RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	LGMN	Q99538	433 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	LRRC61	Q9BV99	259 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	CLPB	Q9H078	707 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	CCDC86	Q9H6F5	360 aa	Known RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	LUC7L	Q9NQ29	371 aa	Known RBP	11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	KCTD5	Q9NXV2	234 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	HYOU1	Q9Y4L1	999 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	TTLL3	Q9Y4R7	772 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	ALG6	Q9Y672	507 aa		11.21	□□□□□ -0.61
CKS1B-206	ENST00000474215	FREM2	Q5SZK8	3169 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	LY6G6E	A0A0G2JKS1	128 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	NPIPB15	A6NHN6	443 aa	Predicted RBP	11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	SRRM3	A6NNA2	597 aa	Predicted RBP	11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	KCNK1	O00180	336 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	CACNB4	O00305	520 aa	Predicted RBP	11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	PDE2A	O00408	941 aa	Predicted RBP	11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	APOL1	O14791	398 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	OPA1	O60313	960 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	FZD6	O60353	706 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	KRT37	O76014	449 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	GP1BA	P07359	652 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	ANXA6	P08133	673 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	CTSE	P14091	401 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	TSHR	P16473	764 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	CTPS1	P17812	591 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	KEL	P23276	732 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	CYLC1	P35663	651 aa	Predicted RBP	11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	KIAA1024L	P59773	190 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	INSM1	Q01101	510 aa	Predicted RBP	11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	NIPAL4	Q0D2K0	466 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	TARDBP	Q13148	414 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	ARHGEF7	Q14155	803 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	PDK1	Q15118	436 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	ELOC	Q15369	112 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	HES3	Q5TGS1	186 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	DENND2C	Q68D51	928 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	ESRP1	Q6NXG1	681 aa	Known RBP	11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	RD3	Q7Z3Z2	195 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	HSD11B1L	Q7Z5J1	315 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	GAS2L3	Q86XJ1	694 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	RFX6	Q8HWS3	928 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	TMTC1	Q8IUR5	882 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	CACTIN-AS1	Q8N1I8	211 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	SDR16C5	Q8N3Y7	309 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	FSTL5	Q8N475	847 aa	Predicted RBP	11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	SCG3	Q8WXD2	468 aa	Known RBP	11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	NUS1	Q96E22	293 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	KL	Q9UEF7	1012 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215	EPN1	Q9Y6I3	576 aa	Predicted RBP	11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215		U3KQA8	63 aa		11.2	□□□□□ -0.62
CKS1B-206	ENST00000474215		A0A0A6YYK5	440 aa	Predicted RBP	11.19	□□□□□ -0.62
CKS1B-206	ENST00000474215		A0A0J9YYE9	177 aa		11.19	□□□□□ -0.62
CKS1B-206	ENST00000474215	CPED1	A4D0V7	1026 aa		11.19	□□□□□ -0.62
CKS1B-206	ENST00000474215	TMEM202	A6NGA9	273 aa		11.19	□□□□□ -0.62
CKS1B-206	ENST00000474215	PSMD11	O00231	422 aa		11.19	□□□□□ -0.62
CKS1B-206	ENST00000474215	TAF4	O00268	1085 aa		11.19	□□□□□ -0.62
CKS1B-206	ENST00000474215	TNFRSF10C	O14798	259 aa		11.19	□□□□□ -0.62
CKS1B-206	ENST00000474215	NDUFA10	O95299	355 aa		11.19	□□□□□ -0.62
CKS1B-206	ENST00000474215	PRL	P01236	227 aa		11.19	□□□□□ -0.62
CKS1B-206	ENST00000474215	TNF	P01375	233 aa		11.19	□□□□□ -0.62
CKS1B-206	ENST00000474215	TRBC1	P01850	177 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms