RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 LSMEM2Q8N112 164 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 OR1E3Q8WZA6 343 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 NUDCD1Q96RS6 583 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 MGME1Q9BQP7 344 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 NUP85Q9BW27 656 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 B4GALT6Q9UBX8 382 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 ANAPC7Q9UJX3 599 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 PCDHGC4Q9Y5F7 938 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 DGKBQ9Y6T7 804 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 SETXQ7Z333 2677 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 A8MX80 341 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 NTN3O00634 580 aaPredicted RBP18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 GYPCP04921 128 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 CYP1A2P05177 515 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 TRIM23P36406 574 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 UBASH3AP57075 661 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 ERVPABLB-1P60509 514 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 ZBED6P86452 979 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 SDR16C5Q8N3Y7 309 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 ATPAF2Q8N5M1 289 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 PAF1Q8N7H5 531 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 ZNF248Q8NDW4 579 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 OR56A4Q8NGH8 313 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 ATL2Q8NHH9 583 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 GRAMD1AQ96CP6 724 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 PRR11Q96HE9 360 aaPredicted RBP18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 COQ10AQ96MF6 247 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 FCRL3Q96P31 734 aaPredicted RBP18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 LGMNQ99538 433 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 LGR4Q9BXB1 951 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 NOD2Q9HC29 1040 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 GULP1Q9UBP9 304 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 CAPN11Q9UMQ6 739 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 NENFQ9UMX5 172 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 GPR34Q9UPC5 381 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 DOLKQ9UPQ8 538 aa18.85■□□□□ 0.61
CCDC88B-206ENST00000473405 CD48P09326 243 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 IL4RP24394 825 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 HSPA9P38646 679 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 MAXP61244 160 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 TRAF2Q12933 501 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 CNGA3Q16281 694 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 GKN2Q86XP6 184 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 WDR48Q8TAF3 677 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 FAM71BQ8TC56 605 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 CPLX3Q8WVH0 158 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 SCG3Q8WXD2 468 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 CCDC74AQ96AQ1 378 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 NAF1Q96HR8 494 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 UBL7Q96S82 380 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 MRPL40Q9NQ50 206 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 IP6K2Q9UHH9 426 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 UNC13CQ8NB66 2214 aa18.84■□□□□ 0.61
CCDC88B-206ENST00000473405 CACNB4O00305 520 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 CPP00450 1065 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 HOXC4P09017 264 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 LHCGRP22888 699 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 SERPINB6P35237 376 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 TPM4P67936 248 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 MMRN1Q13201 1228 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 SPIDRQ14159 915 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 ACOX1Q15067 660 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 CPNE8Q86YQ8 564 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 GPR156Q8NFN8 814 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 PDCD6IPQ8WUM4 868 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 SLC46A1Q96NT5 459 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 WDR26Q9H7D7 661 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 THSD1Q9NS62 852 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 PCDHGA8Q9Y5G5 932 aa18.83■□□□□ 0.6
CCDC88B-206ENST00000473405 NPIPB15A6NHN6 443 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 TNFRSF10CO14798 259 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 MFSD11O43934 449 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 HEXIM1O94992 359 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 TNFP01375 233 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 VIPR1P32241 457 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 MMP13P45452 471 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 ARSEP51690 589 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 CDH6P55285 790 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 SKOR1P84550 965 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 PTPRRQ15256 657 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 PNCKQ6P2M8 343 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 B3GNT8Q7Z7M8 397 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 SFTPA2Q8IWL1 248 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 CBARPQ8N350 705 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 IQCDQ96DY2 449 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 NUS1Q96E22 293 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 MCCC1Q96RQ3 725 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 TMEM168Q9H0V1 697 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 SYNDIG1Q9H7V2 258 aa18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 RCOR3Q9P2K3 495 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-206ENST00000473405 ZFC3H1O60293 1989 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 A0A1W2PQ67 120 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 D6RAR5 112 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 PGLSO95336 258 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 MYCLP1P12525 358 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 KELP23276 732 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 DPYSL3Q14195 570 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 KRT81Q14533 505 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms