RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 MGAT1P26572 445 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 SLC6A3Q01959 620 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 DNAJA4Q8WW22 397 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-209ENST00000472056 RHBDF1Q96CC6 855 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 EXD2Q9NVH0 621 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 KDELR1P24390 212 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF143P52747 638 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-209ENST00000472056 C1orf189Q5VU69 101 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 FRMD6Q96NE9 622 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 CCDC115Q96NT0 180 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 CCDC177Q9NQR7 707 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-209ENST00000472056 RPTORQ8N122 1335 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 PDCD5O14737 125 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 DEPDC5O75140 1603 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 ALDH9A1P49189 494 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 IL18R1Q13478 541 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 SHQ1Q6PI26 577 aaKnown RBP13.34□□□□□ -0.27
COL6A3-209ENST00000472056 KCNT2Q6UVM3 1135 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 CD44P16070 742 aaKnown RBP13.34□□□□□ -0.27
COL6A3-209ENST00000472056 CRATP43155 626 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 ADAM17P78536 824 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 GPR162Q16538 588 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 STXBP5Q5T5C0 1151 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 GRHL2Q6ISB3 625 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 ANKRD26P1Q6NSI1 321 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 SV2AQ7L0J3 742 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 TRABD2AQ86V40 505 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 PPP1R16AQ96I34 528 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 MROH8Q9H579 483 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 SLC25A12O75746 678 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 IRAK1BP1Q5VVH5 260 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 SPESP1Q6UW49 350 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 TMEM110Q86TL2 294 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 ARL10Q8N8L6 244 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 POPDC2Q9HBU9 364 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 CDH22Q9UJ99 828 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 MIA3Q5JRA6 1907 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 CYB561D2O14569 222 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 TYMPP19971 482 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 RORCP51449 518 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 RBBP4Q09028 425 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 FAM71AQ8IYT1 594 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 TMX2Q9Y320 296 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 OR1E1P30953 314 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF697Q5TEC3 545 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 WDR59Q6PJI9 974 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 SLC5A5Q92911 643 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 C2orf49Q9BVC5 232 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-209ENST00000472056 INTS10Q9NVR2 710 aaKnown RBP13.34□□□□□ -0.27
COL6A3-209ENST00000472056 ROBO2Q9HCK4 1378 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 GPR75-ASB3A0A0A6YYF3 556 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 CSF1RP07333 972 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 FGFR1P11362 822 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 SERPINA4P29622 427 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 CRY1Q16526 586 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 USP49Q70CQ1 688 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 PTAR1Q7Z6K3 402 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-209ENST00000472056 MAF1Q9H063 256 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 SLC6A15Q9H2J7 730 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 RHOJQ9H4E5 214 aa13.34□□□□□ -0.27
COL6A3-209ENST00000472056 EBNA1BP2Q99848 306 aaKnown RBP13.34□□□□□ -0.27
COL6A3-209ENST00000472056 THUMPD1Q9NXG2 353 aaKnown RBP13.34□□□□□ -0.27
COL6A3-209ENST00000472056 ANKDD1BA6NHY2 528 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 LIASO43766 372 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 B3GAT3O94766 335 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 PET100P0DJ07 73 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 NOS2P35228 1153 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 OAZ1P54368 228 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 PKNOX1P55347 436 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 GCNT7Q6ZNI0 430 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 UNC93AQ86WB7 457 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 DSELQ8IZU8 1212 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 DAW1Q8N136 415 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 TMEM169Q96HH4 297 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 DIRAS2Q96HU8 199 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 LMAN2LQ9H0V9 348 aa13.33□□□□□ -0.27
COL6A3-209ENST00000472056 RPLP0P05388 317 aaKnown RBP13.33□□□□□ -0.28
COL6A3-209ENST00000472056 TMEM119Q4V9L6 283 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 PIF1Q9H611 641 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 C14orf105Q9NVL8 296 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 DNAAF2Q9NVR5 837 aaKnown RBP13.33□□□□□ -0.28
COL6A3-209ENST00000472056 SPEF1Q9Y4P9 236 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 PITPNM1O00562 1244 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 IGFBP5P24593 272 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 MTHFRP42898 656 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 SPIBQ01892 262 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 BST1Q10588 318 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 ZNF280DQ6N043 979 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 GPR180Q86V85 440 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 IQCKQ8N0W5 287 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 LINC00471Q8N535 108 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 KIAA0895Q8NCT3 520 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 LPCAT1Q8NF37 534 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 GPATCH1Q9BRR8 931 aaKnown RBP13.33□□□□□ -0.28
COL6A3-209ENST00000472056 CHMP1AQ9HD42 196 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-209ENST00000472056 PCDHGB7Q9Y5F8 929 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 PGRP06401 933 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 EPHB3P54753 998 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 NAGLUP54802 743 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 ANTXR2P58335 489 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms