RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	NAGA	P17050	411 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	DDX5	P17844	614 aa	Known RBP	3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	UBA7	P41226	1012 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	ACVR2B	Q13705	512 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	MYBPC2	Q14324	1141 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	HNF4G	Q14541	408 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	JADE1	Q6IE81	842 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	FBXO46	Q6PJ61	603 aa	Predicted RBP	3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	GLDN	Q6ZMI3	551 aa	Predicted RBP	3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	QSOX2	Q6ZRP7	698 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	CCDC129	Q6ZRS4	1044 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044		Q6ZTK2	550 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	MTSS1L	Q765P7	747 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	ADGRF2	Q8IZF7	708 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	WDTC1	Q8N5D0	677 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	AGBL3	Q8NEM8	1001 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	TRIB2	Q92519	343 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	ARHGEF26	Q96DR7	871 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	PGAM5	Q96HS1	289 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	CMTM3	Q96MX0	182 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	ZNF48	Q96MX3	618 aa	Predicted RBP	3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	ZNF570	Q96NI8	536 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	TMEM47	Q9BQJ4	181 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	SDF4	Q9BRK5	362 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	C1QTNF5	Q9BXJ0	243 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	KAT14	Q9H8E8	782 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	MKKS	Q9NPJ1	570 aa	Predicted RBP	3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	HAUS2	Q9NVX0	235 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	TMEM51	Q9NW97	253 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	CISD1	Q9NZ45	108 aa	Known RBP	3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	CNOT8	Q9UFF9	292 aa	Known RBP	3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	VPS28	Q9UK41	221 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	MTMR6	Q9Y217	621 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	STON1	Q9Y6Q2	735 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	ZNF521	Q96K83	1311 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	IGHV4-28	A0A0C4DH34	117 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044		A0A1B0GVM2	712 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	KDM4E	B2RXH2	506 aa	Predicted RBP	3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044		B4DGG1	531 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	PTGES3L	E9PB15	166 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	INO80B-WBP1	J3KQ70	363 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	TNFRSF13B	O14836	293 aa	Predicted RBP	3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	VILL	O15195	856 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	HCRTR2	O43614	444 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	ITM2A	O43736	263 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	NDUFS3	O75489	264 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	SLC25A12	O75746	678 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	HOXD3	P31249	432 aa	Predicted RBP	3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	PPARG	P37231	505 aa	Predicted RBP	3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	HADHA	P40939	763 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	COMP	P49747	757 aa	Predicted RBP	3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	PGGT1B	P53609	377 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	PMS2	P54278	862 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	F2RL1	P55085	397 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	CREB5	Q02930	508 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	PPAT	Q06203	517 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	GPS2	Q13227	327 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	NAE1	Q13564	534 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	CTTN	Q14247	550 aa	Known RBP	3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	NEDD9	Q14511	834 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	ADIPOQ	Q15848	244 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	C2orf68	Q2NKX9	166 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	DUSP28	Q4G0W2	176 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	FSCB	Q5H9T9	825 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	ANKRD54	Q6NXT1	300 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	TMEM154	Q6P9G4	183 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	TICAM1	Q8IUC6	712 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	RNF168	Q8IYW5	571 aa	Predicted RBP	3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	AADAT	Q8N5Z0	425 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	ARRDC2	Q8TBH0	407 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	PPP1R13B	Q96KQ4	1090 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	C1orf74	Q96LT6	269 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	SEPT5	Q99719	369 aa	Predicted RBP	3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	MMTAG2	Q9BU76	263 aa	Known RBP	3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	FAM234A	Q9H0X4	552 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	RBM38	Q9H0Z9	239 aa	Known RBP	3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	CCDC68	Q9H2F9	335 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	ESRP2	Q9H6T0	727 aa	Known RBP	3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	SH2D4A	Q9H788	454 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	OR6C3	Q9NZP0	311 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	TBC1D29	Q9UFV1	150 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	ERVK-11	Q9UQG0	969 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	EVPL	Q92817	2033 aa		3.92	□□□□□ -1.78
PTCD3-209	ENST00000472044	OR6C75	A6NL08	312 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	ASAP2	O43150	1006 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	HNRNPCL1	O60812	293 aa	Known RBP	3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	VNN2	O95498	520 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	KRT10	P13645	584 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	MAOA	P21397	527 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	HOXA13	P31271	388 aa	Predicted RBP	3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	METAP2	P50579	478 aa	Known RBP eCLIP	3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	NUDT6	P53370	316 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	ABAT	P80404	500 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	ZBED6	P86452	979 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	MC1R	Q01726	317 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044		Q0VFX4	171 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	CUL4A	Q13619	759 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	PPP6R3	Q5H9R7	873 aa	Predicted RBP	3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	PLEKHS1	Q5SXH7	462 aa		3.91	□□□□□ -1.78
PTCD3-209	ENST00000472044	FNBP1L	Q5T0N5	605 aa		3.91	□□□□□ -1.78

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