RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ABI1Q8IZP0 508 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 IFT43Q96FT9 208 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 MAELQ96JY0 434 aaKnown RBP19.14■□□□□ 0.65
VIM-203ENST00000469543 KLHL4Q9C0H6 718 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 GKN1Q9NS71 199 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 POLR3BQ9NW08 1133 aaPredicted RBP19.14■□□□□ 0.65
VIM-203ENST00000469543 MARCH5Q9NX47 278 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 NPHS1O60500 1241 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 NBNO60934 754 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 BMP1P13497 986 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 ATF6P18850 670 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 SGSHP51688 502 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 RALGDSQ12967 914 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 KIAA0408Q6ZU52 694 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 LRRC49Q8IUZ0 686 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 PDCD6IPQ8WUM4 868 aaKnown RBP19.14■□□□□ 0.65
VIM-203ENST00000469543 BCL7CQ8WUZ0 217 aaPredicted RBP19.14■□□□□ 0.65
VIM-203ENST00000469543 KCNA7Q96RP8 456 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 GSTO2Q9H4Y5 243 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 COPS7BQ9H9Q2 264 aaPredicted RBP19.14■□□□□ 0.65
VIM-203ENST00000469543 TLR8Q9NR97 1041 aaKnown RBP19.14■□□□□ 0.65
VIM-203ENST00000469543 ADA2Q9NZK5 511 aa19.14■□□□□ 0.65
VIM-203ENST00000469543 TXNDC9O14530 226 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 INPPL1O15357 1258 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 SLC11A1P49279 550 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 SCNN1BP51168 640 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 YBX1P67809 324 aaKnown RBP19.13■□□□□ 0.65
VIM-203ENST00000469543 SH3BP2P78314 561 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 PITRM1Q5JRX3 1037 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 FBXL19Q6PCT2 694 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 PAOXQ6QHF9 649 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 LILRA2Q8N149 483 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 CALML6Q8TD86 181 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 KLHL32Q96NJ5 620 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 EFCAB1Q9HAE3 211 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 SPO11Q9Y5K1 396 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 ARHGEF37A1IGU5 675 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 FBP2O00757 339 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 CD3EAPO15446 510 aaKnown RBP19.13■□□□□ 0.65
VIM-203ENST00000469543 GPR39O43194 453 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 SLC7A4O43246 635 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 ZNF235Q14590 738 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 ACAP2Q15057 778 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 OR4D1Q15615 310 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 AGKQ53H12 422 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 PELI3Q8N2H9 469 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 IL37Q9NZH6 218 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 GALPQ9UBC7 116 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 TRAF6Q9Y4K3 522 aa19.13■□□□□ 0.65
VIM-203ENST00000469543 ZFP37Q9Y6Q3 630 aaPredicted RBP19.13■□□□□ 0.65
VIM-203ENST00000469543 MAGEA13PA6NCF6 341 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 DRGXA6NNA5 263 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 UBXN8O00124 270 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 ALDH2P05091 517 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 CLCN5P51795 746 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 MRPL58Q14197 206 aaKnown RBP19.12■□□□□ 0.65
VIM-203ENST00000469543 PFKFB4Q16877 469 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 LCA5Q86VQ0 697 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 DENND1CQ8IV53 801 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 LRCH3Q96II8 777 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 POLR1EQ9GZS1 481 aaKnown RBP19.12■□□□□ 0.65
VIM-203ENST00000469543 MFSD1Q9H3U5 465 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 IKZF3Q9UKT9 509 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.12■□□□□ 0.65
VIM-203ENST00000469543 UBA6A0AVT1 1052 aaPredicted RBP19.12■□□□□ 0.65
VIM-203ENST00000469543 FAM92AA1XBS5 289 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 E7ENX8 843 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 SLCO1B7G3V0H7 640 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 ENPP3O14638 875 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 DNAJA2O60884 412 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 GLP2RO95838 553 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 TACR2P21452 398 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 CST5P28325 142 aaPredicted RBP19.12■□□□□ 0.65
VIM-203ENST00000469543 DNAJB13P59910 316 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 ECT2LQ008S8 904 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 IL10RBQ08334 325 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 KLC3Q6P597 504 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 C16orf89Q6UX73 402 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 ESAMQ96AP7 390 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 CCDC28BQ9BUN5 200 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 PCDHGC4Q9Y5F7 938 aa19.12■□□□□ 0.65
VIM-203ENST00000469543 VCLP18206 1134 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 ALDH1A3P47895 512 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 POLD2P49005 469 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 GK3PQ14409 553 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 ADGRG6Q86SQ4 1221 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 TADA1Q96BN2 335 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 TRIM8Q9BZR9 551 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 UBDO15205 165 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 TSPAN3O60637 253 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 PRAMEF11O60813 436 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 UNC50Q53HI1 259 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 ZNF678Q5SXM1 525 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 JADE3Q92613 823 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 BHMTQ93088 406 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 WBP2Q969T9 261 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 CASD1Q96PB1 797 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 RANBP9Q96S59 729 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 VCXQ9H320 206 aa19.11■□□□□ 0.65
VIM-203ENST00000469543 BPIFA1Q9NP55 256 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms