RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 SMARCAL1Q9NZC9 954 aa11.7□□□□□ -0.54
CUX1-207ENST00000465461 CD84Q9UIB8 345 aa11.7□□□□□ -0.54
CUX1-207ENST00000465461 CDV3Q9UKY7 258 aaKnown RBP11.7□□□□□ -0.54
CUX1-207ENST00000465461 TPX2Q9ULW0 747 aaKnown RBP11.7□□□□□ -0.54
CUX1-207ENST00000465461 GVINP1Q7Z2Y8 2422 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 TP53BP1Q12888 1972 aaPredicted RBP11.69□□□□□ -0.54
CUX1-207ENST00000465461 A0A0J9YYE9 177 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 A0A1W2PQ67 120 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 DCDC2BA2VCK2 349 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 FPGTO14772 594 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 MTSS1O43312 755 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 FOXD2O60548 495 aaPredicted RBP11.69□□□□□ -0.54
CUX1-207ENST00000465461 HEXIM1O94992 359 aaKnown RBP11.69□□□□□ -0.54
CUX1-207ENST00000465461 CLDN7O95471 211 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 TRBC1P01850 177 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 FGGP02679 453 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 CYP2A6P11509 494 aaPredicted RBP11.69□□□□□ -0.54
CUX1-207ENST00000465461 PSMB4P28070 264 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 NUDT1P36639 197 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 ETV3P41162 512 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 CHRNA4P43681 627 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 ARHGAP8P85298 464 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 CDK18Q07002 472 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 SHBQ15464 509 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 SIX1Q15475 284 aaPredicted RBP11.69□□□□□ -0.54
CUX1-207ENST00000465461 LRRC66Q68CR7 880 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 KDELC1Q6UW63 502 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 USP45Q70EL2 814 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 ABI3BPQ7Z7G0 1075 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 SLC22A18ASQ8N1D0 253 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 SLC25A41Q8N5S1 370 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 IPMKQ8NFU5 416 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 IFT43Q96FT9 208 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 CAMK1GQ96NX5 476 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 LENG8Q96PV6 779 aaPredicted RBP11.69□□□□□ -0.54
CUX1-207ENST00000465461 FCRL5Q96RD9 977 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 TRIB3Q96RU7 358 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 MLPHQ9BV36 600 aaPredicted RBP11.69□□□□□ -0.54
CUX1-207ENST00000465461 PPIL1Q9Y3C6 166 aa11.69□□□□□ -0.54
CUX1-207ENST00000465461 A6NNZ2 444 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 ANKRD66B4E2M5 251 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 K7ESM1 405 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 SLC30A4O14863 429 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 LIASO43766 372 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 KIF5CO60282 957 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 OPHN1O60890 802 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 AGTP01019 485 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 SLC4A1P02730 911 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 C1SP09871 688 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 ETS1P14921 441 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 CA4P22748 312 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 WNT3AP56704 352 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 PTSQ03393 145 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 BNIP3Q12983 259 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 PDE1CQ14123 709 aaPredicted RBP11.68□□□□□ -0.54
CUX1-207ENST00000465461 ARHGEF7Q14155 803 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 SPARCL1Q14515 664 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 INPP5AQ14642 412 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 LRRC14Q15048 493 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 CDKN3Q16667 212 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 LONRF2Q1L5Z9 754 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 FAXCQ5TGI0 409 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 Q6ZVL8 140 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 GATAD2AQ86YP4 633 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 ASB12Q8WXK4 309 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 SPOCK2Q92563 424 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 FUBP1Q96AE4 644 aaKnown RBP11.68□□□□□ -0.54
CUX1-207ENST00000465461 MRGPRX2Q96LB1 330 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 COQ10AQ96MF6 247 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 MCCC1Q96RQ3 725 aaPredicted RBP11.68□□□□□ -0.54
CUX1-207ENST00000465461 VAT1Q99536 393 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 APOL2Q9BQE5 337 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 ZDHHC5Q9C0B5 715 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 GBA3Q9H227 469 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 TM7SF3Q9NS93 570 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 FAM153AQ9UHL3 310 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 TRHDEQ9UKU6 1024 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 SHOC2Q9UQ13 582 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 JRKLQ9Y4A0 524 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 OR1A2Q9Y585 309 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 HS3ST3A1Q9Y663 406 aa11.68□□□□□ -0.54
CUX1-207ENST00000465461 FRYLO94915 3013 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 GOLGA6CA6NDK9 693 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 GOLGA6BA6NDN3 693 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 CAPN8A6NHC0 703 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 TM4SF5O14894 197 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 SCAMP1O15126 338 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 ZNF185O15231 689 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 SDC3O75056 442 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 METTL18O95568 372 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 CER1O95813 267 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 ATXN1LP0C7T5 689 aaKnown RBP11.67□□□□□ -0.54
CUX1-207ENST00000465461 ZSCAN5DPP0CG00 497 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 GOLGA6DP0CG33 693 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 CD59P13987 128 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 ID4P47928 161 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 KCNJ1P48048 391 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 LIMK1P53667 647 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 PFN3P60673 137 aa11.67□□□□□ -0.54
CUX1-207ENST00000465461 GNG11P61952 73 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms