RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 PEX6Q13608 980 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 LBRQ14739 615 aaKnown RBP15.44■□□□□ 0.06
SKA3-204ENST00000462482 CA9Q16790 459 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 FILIP1LQ4L180 1135 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 CERCAMQ5T4B2 595 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 KIAA1614Q5VZ46 1190 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 AFMIDQ63HM1 303 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 PLEKHA7Q6IQ23 1121 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 OGFOD3Q6PK18 319 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 USP53Q70EK8 1073 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 ZSWIM9Q86XI8 627 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 TTC9Q92623 222 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 ECHDC3Q96DC8 303 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 TRIM11Q96F44 468 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 PSKH2Q96QS6 385 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 KCTD15Q96SI1 283 aaPredicted RBP15.44■□□□□ 0.06
SKA3-204ENST00000462482 FGF22Q9HCT0 170 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 PHPT1Q9NRX4 125 aaPredicted RBP15.44■□□□□ 0.06
SKA3-204ENST00000462482 LRIT1Q9P2V4 623 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 LOXL2Q9Y4K0 774 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 PCDHB11Q9Y5F2 797 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 SMG1Q96Q15 3661 aaKnown RBP15.44■□□□□ 0.06
SKA3-204ENST00000462482 LOC400499M0QZD8 3231 aa15.44■□□□□ 0.06
SKA3-204ENST00000462482 A0A1W2PQM1 296 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 TMEM191CA6NGB0 347 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 A8MX80 341 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 B8ZZF3 427 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 H3BRJ5 948 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 ATMINO43313 823 aaPredicted RBP15.43■□□□□ 0.06
SKA3-204ENST00000462482 NUDT21O43809 227 aaKnown RBP15.43■□□□□ 0.06
SKA3-204ENST00000462482 KRT10P13645 584 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 MIPP30301 263 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 ILF3Q12906 894 aaKnown RBP eCLIP15.43■□□□□ 0.061e-7■■■■□ 26.5
SKA3-204ENST00000462482 RALGDSQ12967 914 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 TMEM164Q5U3C3 297 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 PNCKQ6P2M8 343 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 IRF2BP2Q7Z5L9 587 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 ZSCAN1Q8NBB4 408 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 FNIP1Q8TF40 1166 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 PDCD6IPQ8WUM4 868 aaKnown RBP15.43■□□□□ 0.06
SKA3-204ENST00000462482 NUS1Q96E22 293 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 ARHGAP9Q9BRR9 750 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 GSDMCQ9BYG8 508 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 TMEM168Q9H0V1 697 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 CARS2Q9HA77 564 aaKnown RBP15.43■□□□□ 0.06
SKA3-204ENST00000462482 MRPL47Q9HD33 250 aaKnown RBP15.43■□□□□ 0.06
SKA3-204ENST00000462482 MRPL40Q9NQ50 206 aaKnown RBP15.43■□□□□ 0.06
SKA3-204ENST00000462482 TAS2R14Q9NYV8 317 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 CNOT8Q9UFF9 292 aaKnown RBP15.43■□□□□ 0.06
SKA3-204ENST00000462482 MYLKQ15746 1914 aa15.43■□□□□ 0.06
SKA3-204ENST00000462482 DOCK4Q8N1I0 1966 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 PRSS38A1L453 326 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 RHPN2P1A8MT19 583 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 CASC3O15234 703 aaKnown RBP15.42■□□□□ 0.06
SKA3-204ENST00000462482 NVLO15381 856 aaKnown RBP15.42■□□□□ 0.06
SKA3-204ENST00000462482 SOCS5O75159 536 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 CPP00450 1065 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 FTLP02792 175 aaPredicted RBP15.42■□□□□ 0.06
SKA3-204ENST00000462482 LIPCP11150 499 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 CYP2A6P11509 494 aaPredicted RBP15.42■□□□□ 0.06
SKA3-204ENST00000462482 MYCLP1P12525 358 aaPredicted RBP15.42■□□□□ 0.06
SKA3-204ENST00000462482 GZMAP12544 262 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 ATP1A3P13637 1013 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 HGFP14210 728 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 TRIM23P36406 574 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 MAP9Q49MG5 647 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 PHF19Q5T6S3 580 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 DENND2CQ68D51 928 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 SPECC1LQ69YQ0 1117 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 SPRED1Q7Z699 444 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 PIM3Q86V86 326 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 ARHGAP12Q8IWW6 846 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 NDUFAF2Q8N183 169 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 AOPEPQ8N6M6 819 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 ZNF653Q96CK0 615 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 SUDS3Q9H7L9 328 aaPredicted RBP15.42■□□□□ 0.06
SKA3-204ENST00000462482 B4GALT6Q9UBX8 382 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 ACSL6Q9UKU0 697 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 HEMK1Q9Y5R4 338 aaPredicted RBP15.42■□□□□ 0.06
SKA3-204ENST00000462482 RNF215Q9Y6U7 377 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 DOCK9Q9BZ29 2069 aa15.42■□□□□ 0.06
SKA3-204ENST00000462482 GOLGA6CA6NDK9 693 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 GOLGA6BA6NDN3 693 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 LRRC53A6NM62 1247 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 TRAFD1O14545 582 aaPredicted RBP15.41■□□□□ 0.06
SKA3-204ENST00000462482 NOBOXO60393 691 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 GOLGA6DP0CG33 693 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 MYBL1P10243 752 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 VIPR1P32241 457 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 MAPK10P53779 464 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 HLTFQ14527 1009 aaKnown RBP eCLIP15.41■□□□□ 0.06
SKA3-204ENST00000462482 BOLA3Q53S33 107 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 MANEAQ5SRI9 462 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 TMCO3Q6UWJ1 677 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 XKR5Q6UX68 686 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 ARHGAP36Q6ZRI8 547 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 NPWQ8N729 165 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 SGF29Q96ES7 293 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 PEBP4Q96S96 227 aa15.41■□□□□ 0.06
SKA3-204ENST00000462482 HAUS4Q9H6D7 363 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms