RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 A8MT66 165 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 CCL22O00626 93 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 INMTO95050 263 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 STMN1P16949 149 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 AGXTP21549 392 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 HTR1BP28222 390 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 TGFBR1P36897 503 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 BAG6P46379 1132 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 RAB10P61026 200 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 PLIN5Q00G26 463 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 INPP5AQ14642 412 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 GEN1Q17RS7 908 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 NOMO2Q5JPE7 1267 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 LDB1Q86U70 411 aaPredicted RBP11.75□□□□□ -0.53
CPSF3-202ENST00000460593 NUDT8Q8WV74 236 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 AKT1S1Q96B36 256 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 SDCCAG3Q96C92 435 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 NSMCE3Q96MG7 304 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 MCMBPQ9BTE3 642 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 CCDC90BQ9GZT6 254 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 ADAMTS10Q9H324 1103 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 CASS4Q9NQ75 786 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 FZD10Q9ULW2 581 aa11.75□□□□□ -0.53
CPSF3-202ENST00000460593 FXYD1O00168 92 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 APOA4P06727 396 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 MBL2P11226 248 aaPredicted RBP11.74□□□□□ -0.53
CPSF3-202ENST00000460593 SLC1A2P43004 574 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 KCNC1P48547 511 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 NDUFV1P49821 464 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 HMGCS2P54868 508 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 MEP1AQ16819 746 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 PAGE2BQ5JRK9 111 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 SLC26A9Q7LBE3 791 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 DUS3LQ96G46 650 aaKnown RBP11.74□□□□□ -0.53
CPSF3-202ENST00000460593 RNF145Q96MT1 663 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 EIF2AQ9BY44 585 aaKnown RBP11.74□□□□□ -0.53
CPSF3-202ENST00000460593 DNAI2Q9GZS0 605 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 MRPL40Q9NQ50 206 aaKnown RBP11.74□□□□□ -0.53
CPSF3-202ENST00000460593 PRDM8Q9NQV8 689 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 WDR70Q9NW82 654 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 BTRCQ9Y297 605 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 CLDN25C9JDP6 229 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 ACKR2O00590 384 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 PFDN6O15212 129 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 SUPT7LO94864 414 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 FARP2O94887 1054 aaPredicted RBP11.74□□□□□ -0.53
CPSF3-202ENST00000460593 EGFRP00533 1210 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 JCHAINP01591 159 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 GFAPP14136 432 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 ERCC2P18074 760 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 PAX3P23760 479 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 FOXA1P55317 472 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 MAPRE2Q15555 327 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 PKDCCQ504Y2 493 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 CCNYL2Q5T2Q4 361 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 SYPL2Q5VXT5 272 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 IQSEC1Q6DN90 963 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 ZNF773Q6PK81 442 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 VASH1Q7L8A9 365 aaPredicted RBP11.74□□□□□ -0.53
CPSF3-202ENST00000460593 SPRED1Q7Z699 444 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 SLCO6A1Q86UG4 719 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 LGI2Q8N0V4 545 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 SLC22A17Q8WUG5 538 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 ITPKCQ96DU7 683 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 ITCHQ96J02 903 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 MYRFLQ96LU7 910 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 SLC30A3Q99726 388 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 C11orf84Q9BUA3 381 aaPredicted RBP11.74□□□□□ -0.53
CPSF3-202ENST00000460593 MROQ9BYG7 248 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 ATP13A3Q9H7F0 1226 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 AKTIPQ9H8T0 292 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 ITM2CQ9NQX7 267 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 SETD4Q9NVD3 440 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 DPP3Q9NY33 737 aa11.74□□□□□ -0.53
CPSF3-202ENST00000460593 ZNF214Q9UL59 606 aaPredicted RBP11.74□□□□□ -0.53
CPSF3-202ENST00000460593 IQCA1LA6NCM1 817 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 TRIM64BA6NI03 449 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 HACD1B0YJ81 288 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 I6L893 689 aaPredicted RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 EEF2KO00418 725 aaKnown RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 SEC14L2O76054 403 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 LMO2P25791 158 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 GLUD2P49448 558 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 FKBP1AP62942 108 aaKnown RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 TMEM132DQ14C87 1099 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 FAM45BPQ6NSW5 357 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 C8orf82Q6P1X6 216 aaPredicted RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 SLC22A16Q86VW1 577 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 RYBPQ8N488 228 aaPredicted RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 RDH11Q8TC12 318 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 FAM45AQ8TCE6 357 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 LPAR1Q92633 364 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 NOL6Q9H6R4 1146 aaKnown RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 MEAF6Q9HAF1 191 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 MAP3K20Q9NYL2 800 aaKnown RBP11.73□□□□□ -0.53
CPSF3-202ENST00000460593 RAD54BQ9Y620 910 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 SHROOM3Q8TF72 1996 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 SCN1AP35498 2009 aa11.73□□□□□ -0.53
CPSF3-202ENST00000460593 ZBTB42B2RXF5 422 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms