RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 H7C0S8 307 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 MDM4O15151 490 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 NRG1Q02297 640 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 RNASE12Q5GAN4 147 aaKnown RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 TREML2Q5T2D2 321 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 TAPT1Q6NXT6 567 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 GPR180Q86V85 440 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 CPA6Q8N4T0 437 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 UBAP1Q9NZ09 502 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 PSIP1O75475 530 aaKnown RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 CHRNGP07510 517 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 MYL9P24844 172 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 RPL3P39023 403 aaKnown RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 DDR1Q08345 913 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 FNBP1LQ5T0N5 605 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 FAM35AQ86V20 835 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 FAM129CQ86XR2 697 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 LNX1Q8TBB1 728 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 PIGKQ92643 395 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 MRPL57Q9BQC6 102 aaKnown RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 NDRG2Q9UN36 371 aaKnown RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 MAPRE3Q9UPY8 281 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 KCNE2Q9Y6J6 123 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 AP5Z1O43299 807 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 SLURP2P0DP57 97 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 SSR2P43308 183 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 CXCR3P49682 368 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 STXBP1P61764 594 aaKnown RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 CDK18Q07002 472 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 TIMM50Q3ZCQ8 353 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 TMEM161BQ8NDZ6 487 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 TRPV3Q8NET8 790 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 PIWIL2Q8TC59 973 aaKnown RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 JSRP1Q96MG2 331 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 COPS8Q99627 209 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 MMADHCQ9H3L0 296 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 PRDM16Q9HAZ2 1276 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 GOLGA2P5Q9HBQ8 144 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 FAM105AQ9NUU6 356 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 CD84Q9UIB8 345 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 GIT1Q9Y2X7 761 aa15.43■□□□□ 0.06
PTPRF-206ENST00000429895 SAMHD1Q9Y3Z3 626 aaKnown RBP15.43■□□□□ 0.06
PTPRF-206ENST00000429895 ASTN1O14525 1302 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 CNTNAP1P78357 1384 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 CASZ1Q86V15 1759 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 PAGE1O75459 146 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 MYBL2P10244 700 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 CCT3P49368 545 aaKnown RBP15.42■□□□□ 0.06
PTPRF-206ENST00000429895 OLFML2AQ68BL7 652 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 TSEN2Q8NCE0 465 aaKnown RBP15.42■□□□□ 0.06
PTPRF-206ENST00000429895 TRPM4Q8TD43 1214 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 BAP1Q92560 729 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 RELTQ969Z4 430 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 SLC47A1Q96FL8 570 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 FCRL2Q96LA5 508 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-206ENST00000429895 FRMD6Q96NE9 622 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 HMG20AQ9NP66 347 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 SPAG4Q9NPE6 437 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 PSMD13Q9UNM6 376 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 RNASEH2AO75792 299 aaKnown RBP15.42■□□□□ 0.06
PTPRF-206ENST00000429895 GIMD1P0DJR0 217 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 CDC25CP30307 473 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 PPM1AP35813 382 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 LSM12Q3MHD2 195 aaKnown RBP15.42■□□□□ 0.06
PTPRF-206ENST00000429895 MCEMP1Q8IX19 187 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 IL31RAQ8NI17 732 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 PNPT1Q8TCS8 783 aaKnown RBP15.42■□□□□ 0.06
PTPRF-206ENST00000429895 ITCHQ96J02 903 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 C5orf34Q96MH7 638 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 SLC28A3Q9HAS3 691 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 ERGIC3Q9Y282 383 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 GRM6O15303 877 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 MTRF1O75570 445 aaKnown RBP15.42■□□□□ 0.06
PTPRF-206ENST00000429895 TOP3AQ13472 1001 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-206ENST00000429895 GRB14Q14449 540 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 ADAMTSL2Q86TH1 951 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 TTPALQ9BTX7 342 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 PIGUQ9H490 435 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 ZNF214Q9UL59 606 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-206ENST00000429895 H3BNH8 94 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 MATN4O95460 622 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 BNC1Q01954 994 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 GRIK5Q16478 980 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 TMPRSS11BQ86T26 416 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 CAMK1DQ8IU85 385 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 PMM1Q92871 262 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 MYDGFQ969H8 173 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 FAM84AQ96KN4 292 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 ZNF607Q96SK3 696 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 XPR1Q9UBH6 696 aa15.42■□□□□ 0.06
PTPRF-206ENST00000429895 LYPLA1O75608 230 aaPredicted RBP15.41■□□□□ 0.06
PTPRF-206ENST00000429895 SERPINB7O75635 380 aa15.41■□□□□ 0.06
PTPRF-206ENST00000429895 GTF2BQ00403 316 aa15.41■□□□□ 0.06
PTPRF-206ENST00000429895 NR1D2Q14995 579 aa15.41■□□□□ 0.06
PTPRF-206ENST00000429895 RBFAQ8N0V3 343 aa15.41■□□□□ 0.06
PTPRF-206ENST00000429895 OR10H5Q8NGA6 315 aa15.41■□□□□ 0.06
PTPRF-206ENST00000429895 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.41■□□□□ 0.062e-6■□□□□ 10.5
PTPRF-206ENST00000429895 TMEM51Q9NW97 253 aa15.41■□□□□ 0.06
PTPRF-206ENST00000429895 CLEC4AQ9UMR7 237 aa15.41■□□□□ 0.06
PTPRF-206ENST00000429895 PTPRJQ12913 1337 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms