RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 KRT10P13645 584 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 SLC5A2P31639 672 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 UGT1A5P35504 534 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 MLLT3P42568 568 aaPredicted RBP14.56□□□□□ -0.08
SDC1-204ENST00000429035 TYRO3Q06418 890 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 IL10RBQ08334 325 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 EIF3IQ13347 325 aaKnown RBP14.56□□□□□ -0.08
SDC1-204ENST00000429035 BIRC2Q13490 618 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 ARHGEF7Q14155 803 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 RFTN1Q14699 578 aaPredicted RBP14.56□□□□□ -0.08
SDC1-204ENST00000429035 LBRQ14739 615 aaKnown RBP14.56□□□□□ -0.08
SDC1-204ENST00000429035 PHF19Q5T6S3 580 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 PLEKHA7Q6IQ23 1121 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 IRF2BP2Q7Z5L9 587 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 SFTPA2Q8IWL1 248 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 TP53INP2Q8IXH6 220 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 OR6C4Q8NGE1 309 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 CCL4L1Q8NHW4 92 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 HSPH1Q92598 858 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 EIF3CQ99613 913 aaKnown RBP14.56□□□□□ -0.08
SDC1-204ENST00000429035 SEMA4CQ9C0C4 833 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 ZMYND15Q9H091 742 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 TMEM168Q9H0V1 697 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 HSD3B7Q9H2F3 369 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 HAUS4Q9H6D7 363 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 ZWILCHQ9H900 591 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 B4GALT6Q9UBX8 382 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 AHCTF1Q8WYP5 2266 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 ZFC3H1O60293 1989 aaKnown RBP14.55□□□□□ -0.08
SDC1-204ENST00000429035 PRSS38A1L453 326 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 TMX2-CTNND1H3BSU7 103 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 K7ENP7 123 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 FTLP02792 175 aaPredicted RBP14.55□□□□□ -0.08
SDC1-204ENST00000429035 ITIH1P19827 911 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 ARL4AP40617 200 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 CSNK1DP48730 415 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 RENBPP51606 427 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 MAPK10P53779 464 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 MAZP56270 477 aaKnown RBP14.55□□□□□ -0.08
SDC1-204ENST00000429035 AP1S1P61966 158 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 POLR2LP62875 67 aaKnown RBP14.55□□□□□ -0.08
SDC1-204ENST00000429035 SKOR1P84550 965 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 AGERQ15109 404 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 ANO6Q4KMQ2 910 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 FILIP1LQ4L180 1135 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 C14orf28Q4W4Y0 310 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 SPECC1LQ69YQ0 1117 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 INO80CQ6PI98 192 aaPredicted RBP14.55□□□□□ -0.08
SDC1-204ENST00000429035 CLEC17AQ6ZS10 378 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 PELI3Q8N2H9 469 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 ARFGAP1Q8N6T3 406 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 GPR156Q8NFN8 814 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 TTC9Q92623 222 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 ECHDC3Q96DC8 303 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 CCNL2Q96S94 520 aaPredicted RBP14.55□□□□□ -0.08
SDC1-204ENST00000429035 CARS2Q9HA77 564 aaKnown RBP14.55□□□□□ -0.08
SDC1-204ENST00000429035 CWC15Q9P013 229 aaKnown RBP14.55□□□□□ -0.08
SDC1-204ENST00000429035 DGKBQ9Y6T7 804 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 SCINQ9Y6U3 715 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 RNF215Q9Y6U7 377 aa14.55□□□□□ -0.08
SDC1-204ENST00000429035 CFAP69A5D8W1 941 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 TMEM191CA6NGB0 347 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 CAPN8A6NHC0 703 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 PYCARD-AS1I3L0S3 204 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 NOBOXO60393 691 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 LRCH4O75427 683 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 GLB1P16278 677 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 VIPR1P32241 457 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 PPM1FP49593 454 aaPredicted RBP14.54□□□□□ -0.08
SDC1-204ENST00000429035 MAXP61244 160 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 KLHL30Q0D2K2 578 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 SLC10A7Q0GE19 358 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 SRSF6Q13247 344 aaKnown RBP14.54□□□□□ -0.08
SDC1-204ENST00000429035 TGIF1Q15583 401 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 CNGA3Q16281 694 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 AMZ1Q400G9 498 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 TDRD12Q587J7 1177 aaKnown RBP14.54□□□□□ -0.08
SDC1-204ENST00000429035 CERCAMQ5T4B2 595 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 AFMIDQ63HM1 303 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 E4F1Q66K89 784 aaPredicted RBP14.54□□□□□ -0.08
SDC1-204ENST00000429035 RAET1GQ6H3X3 334 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 DOK6Q6PKX4 331 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 CYP4V2Q6ZWL3 525 aaPredicted RBP14.54□□□□□ -0.08
SDC1-204ENST00000429035 ZNF571Q7Z3V5 609 aaPredicted RBP14.54□□□□□ -0.08
SDC1-204ENST00000429035 SPRED1Q7Z699 444 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 HEATR4Q86WZ0 1026 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 BBS5Q8N3I7 341 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 ATPAF2Q8N5M1 289 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 KIAA1524Q8TCG1 905 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 NSMCE1Q8WV22 266 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 SYT11Q9BT88 431 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 LGR4Q9BXB1 951 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 NAT10Q9H0A0 1025 aaKnown RBP14.54□□□□□ -0.08
SDC1-204ENST00000429035 PHPT1Q9NRX4 125 aaPredicted RBP14.54□□□□□ -0.08
SDC1-204ENST00000429035 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.54□□□□□ -0.082e-6■■■□□ 16.2
SDC1-204ENST00000429035 LRIT1Q9P2V4 623 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 MYO6Q9UM54 1294 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 PCDHGC4Q9Y5F7 938 aa14.54□□□□□ -0.08
SDC1-204ENST00000429035 ATMQ13315 3056 aa14.53□□□□□ -0.08
SDC1-204ENST00000429035 HELZ2Q9BYK8 2649 aaKnown RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms