RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 CSPG4P5Q96PW8 444 aa17.14■□□□□ 0.33
TRIM39-209ENST00000428728 RBM15Q96T37 977 aaKnown RBP eCLIP17.14■□□□□ 0.335e-6■■□□□ 11.5
TRIM39-209ENST00000428728 FUCA2Q9BTY2 467 aa17.14■□□□□ 0.33
TRIM39-209ENST00000428728 SUDS3Q9H7L9 328 aaPredicted RBP17.14■□□□□ 0.33
TRIM39-209ENST00000428728 CPNE5Q9HCH3 593 aa17.14■□□□□ 0.33
TRIM39-209ENST00000428728 ANAPC7Q9UJX3 599 aa17.14■□□□□ 0.33
TRIM39-209ENST00000428728 PCDHGC4Q9Y5F7 938 aa17.14■□□□□ 0.33
TRIM39-209ENST00000428728 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.13■□□□□ 0.33
TRIM39-209ENST00000428728 CFAP69A5D8W1 941 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 ATXN7O15265 892 aaPredicted RBP17.13■□□□□ 0.33
TRIM39-209ENST00000428728 KLK10O43240 276 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 RARAP10276 462 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 TMPRSS3P57727 454 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 MAXP61244 160 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 CNGA3Q16281 694 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 HGSNATQ68CP4 663 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 TAF8Q7Z7C8 310 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 B3GNT8Q7Z7M8 397 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 PGBD5Q8N414 524 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 WDR36Q8NI36 951 aaKnown RBP17.13■□□□□ 0.33
TRIM39-209ENST00000428728 SLC39A7Q92504 469 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 GRAMD1AQ96CP6 724 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 NUS1Q96E22 293 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 PRR11Q96HE9 360 aaPredicted RBP17.13■□□□□ 0.33
TRIM39-209ENST00000428728 GFM1Q96RP9 751 aaKnown RBP17.13■□□□□ 0.33
TRIM39-209ENST00000428728 THAP2Q9H0W7 228 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 WDR26Q9H7D7 661 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 EPB41L5Q9HCM4 733 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 CYP4F12Q9HCS2 524 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 DGKBQ9Y6T7 804 aa17.13■□□□□ 0.33
TRIM39-209ENST00000428728 CCDC187A0A096LP49 1063 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 TEX51A0A1B0GUA7 166 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 B4DGG1 531 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 D6RAR5 112 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 NTN3O00634 580 aaPredicted RBP17.12■□□□□ 0.33
TRIM39-209ENST00000428728 MAFKO60675 156 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 SOCS5O75159 536 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 RPLP0P05388 317 aaKnown RBP17.12■□□□□ 0.33
TRIM39-209ENST00000428728 KELP23276 732 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 HSPA9P38646 679 aaKnown RBP17.12■□□□□ 0.33
TRIM39-209ENST00000428728 CCL7P80098 99 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 FANCCQ00597 558 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 PIGHQ14442 188 aaPredicted RBP17.12■□□□□ 0.33
TRIM39-209ENST00000428728 BOLA3Q53S33 107 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 FIGNQ5HY92 759 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 ARHGAP40Q5TG30 622 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 IGF2-ASQ6U949 168 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 LUZP1Q86V48 1076 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 SFTPA2Q8IWL1 248 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 BBS5Q8N3I7 341 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 SLC46A1Q96NT5 459 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 NUDCD1Q96RS6 583 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 NUP85Q9BW27 656 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 LGR4Q9BXB1 951 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 FOXP3Q9BZS1 431 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 TMEM168Q9H0V1 697 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 NOD2Q9HC29 1040 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 CBX8Q9HC52 389 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 PCDH18Q9HCL0 1135 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 PCDHGA8Q9Y5G5 932 aa17.12■□□□□ 0.33
TRIM39-209ENST00000428728 SYCE3A1L190 88 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 PRSS38A1L453 326 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 GOLGA6CA6NDK9 693 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 GOLGA6BA6NDN3 693 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 HTRA2O43464 458 aaPredicted RBP17.11■□□□□ 0.33
TRIM39-209ENST00000428728 TNFSF15O95150 251 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 PEX11BO96011 259 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 GOLGA6DP0CG33 693 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 CR2P20023 1033 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 VIPR1P32241 457 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 SERPINB6P35237 376 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 GJC1P36383 396 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 SSR1P43307 286 aaKnown RBP17.11■□□□□ 0.33
TRIM39-209ENST00000428728 MMP13P45452 471 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 TPM4P67936 248 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 SLC25A11Q02978 314 aaKnown RBP17.11■□□□□ 0.33
TRIM39-209ENST00000428728 TRAF2Q12933 501 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 KRT81Q14533 505 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 PNCKQ6P2M8 343 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 CCNJLQ8IV13 435 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 ARL14Q8N4G2 192 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 Q8N9G6 341 aaPredicted RBP17.11■□□□□ 0.33
TRIM39-209ENST00000428728 FAM46DQ8NEK8 389 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 CCL4L1Q8NHW4 92 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 NSMCE1Q8WV22 266 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 CPLX3Q8WVH0 158 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 TEKT4Q8WW24 435 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 COQ10AQ96MF6 247 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 MGME1Q9BQP7 344 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 WDR70Q9NW82 654 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 GOLGA6AQ9NYA3 693 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 IP6K2Q9UHH9 426 aa17.11■□□□□ 0.33
TRIM39-209ENST00000428728 SMG1Q96Q15 3661 aaKnown RBP17.11■□□□□ 0.33
TRIM39-209ENST00000428728 A0A1W2PQJ5 194 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 A0A1W2PQM1 296 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 CDRT15L2A8MXV6 281 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 AGRPO00253 132 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 C1QL1O75973 258 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 HEXIM1O94992 359 aaKnown RBP17.1■□□□□ 0.33
TRIM39-209ENST00000428728 SERPING1P05155 500 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms