RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 FAM46CQ5VWP2 391 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 ESRP1Q6NXG1 681 aaKnown RBP17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 TMIEQ8NEW7 156 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 OR6P1Q8NGX9 317 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 PIP4K2CQ8TBX8 421 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 CALML6Q8TD86 181 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 KCNV2Q8TDN2 545 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 HCAR2Q8TDS4 363 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 FAM3CQ92520 227 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 ECHDC3Q96DC8 303 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 SH3GL2Q99962 352 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 FAM167BQ9BTA0 163 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 TMBIM4Q9HC24 238 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 MOCS1Q9NZB8 636 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 SLC2A6Q9UGQ3 507 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 RIMKLBQ9ULI2 386 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 DUSP12Q9UNI6 340 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 ZCWPW2A0A1B0GU75 182 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 MROH6A6NGR9 719 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 UPK3BL1B0FP48 263 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 UPK3BL2E5RIL1 263 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 K7EQS6 105 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 LDB2O43679 373 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 RPP40O75818 363 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 NTSR1P30989 418 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 HADHAP40939 763 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 TMPRSS15P98073 1019 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 FBXO43Q4G163 708 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 C2orf27AQ580R0 203 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 HSP90AA5PQ58FG0 334 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 EMC10Q5UCC4 262 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 FSTL4Q6MZW2 842 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 ERAP2Q6P179 960 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 MARK2Q7KZI7 788 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 SLC26A11Q86WA9 606 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 TDRPQ86YL5 185 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 CNPY4Q8N129 248 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 DNAJC1Q96KC8 554 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 ZNF778Q96MU6 729 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 ACOX2Q99424 681 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 ZFYVE1Q9HBF4 777 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 PLAC1Q9HBJ0 212 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 IARS2Q9NSE4 1012 aaKnown RBP17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 TREX1Q9NSU2 369 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 POLR3BQ9NW08 1133 aaPredicted RBP17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 IL1RAPL1Q9NZN1 696 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 DKK3Q9UBP4 350 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 TBK1Q9UHD2 729 aa17.17■□□□□ 0.34
CCDC28B-202ENST00000421922 IQANK1A0A1B0GTG1 560 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 HMGB1P1B2RPK0 211 aaPredicted RBP17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 BUD23O43709 281 aaKnown RBP17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 CTSLP07711 333 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 KRT15P19012 456 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 HNF1BP35680 557 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 PSMD8P48556 350 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 SERPINB9P50453 376 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 ZNF140P52738 457 aaPredicted RBP17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 MRPS21P82921 87 aaKnown RBP17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 MSLNQ13421 630 aaPredicted RBP17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 ARHGEF7Q14155 803 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 MLF2Q15773 248 aaPredicted RBP17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 POM121L1PQ3SYA9 428 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 AGBL2Q5U5Z8 902 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 LYSMD3Q7Z3D4 306 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 UNC5BQ8IZJ1 945 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 MDGA1Q8NFP4 955 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 OR4K2Q8NGD2 314 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 SLC44A1Q8WWI5 657 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 SCRN2Q96FV2 425 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 PGM2Q96G03 612 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 UHRF1Q96T88 793 aaPredicted RBP17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 NLE1Q9NVX2 485 aaPredicted RBP17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 FBXL21Q9UKT6 434 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 SORCS3Q9UPU3 1222 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 F5P12259 2224 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 CKAP5Q14008 2032 aa17.16■□□□□ 0.34
CCDC28B-202ENST00000421922 ATG2BQ96BY7 2078 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 TSPAN11A1L157 253 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 C16orf96A6NNT2 1141 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 SLC7A4O43246 635 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 KRT37O76014 449 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 KRT38O76015 456 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 KLF8O95600 359 aaPredicted RBP17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 ITGB7P26010 798 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 KIR2DL1P43626 348 aaPredicted RBP17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 UGP2Q16851 508 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 FBXL19Q6PCT2 694 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 AFTPHQ6ULP2 937 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 ZNF852Q6ZMS4 543 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 TTC7BQ86TV6 843 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 ZSWIM9Q86XI8 627 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 MMAAQ8IVH4 418 aaKnown RBP17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 OR13C4Q8NGS5 318 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 SPOCK2Q92563 424 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 HDAC10Q969S8 669 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 PBXIP1Q96AQ6 731 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 ATP6V1G3Q96LB4 118 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 SMIM14Q96QK8 99 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 CPNE1Q99829 537 aa17.15■□□□□ 0.34
CCDC28B-202ENST00000421922 FBRSQ9HAH7 460 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms