RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 RANBP10Q6VN20 620 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 RAPH1Q70E73 1250 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 RTL10Q7L3V2 364 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 SCN4BQ8IWT1 228 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ULK2Q8IYT8 1036 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ATP6V0D2Q8N8Y2 350 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 C2CD4AQ8NCU7 369 aaPredicted RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 SPATA22Q8NHS9 363 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 STYXQ8WUJ0 223 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 PDCD6IPQ8WUM4 868 aaKnown RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 ATXN7L3BQ96GX2 97 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 KXD1Q9BQD3 176 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 GATA5Q9BWX5 397 aaPredicted RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 IRF2BPLQ9H1B7 796 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 CAB39LQ9H9S4 337 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 NMUR1Q9HB89 426 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 SLC2A4RGQ9NR83 387 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 TMEM248Q9NWD8 314 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ABI2Q9NYB9 513 aaPredicted RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 CLIC5Q9NZA1 410 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ACOT9Q9Y305 439 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 MRPS23Q9Y3D9 190 aaKnown RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 INSL5Q9Y5Q6 135 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 FAM92AA1XBS5 289 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 HEATR9A2RTY3 570 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 RTN3O95197 1032 aaPredicted RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 RPSAP08865 295 aaKnown RBP14.89□□□□□ -0.03
USP4-203ENST00000415188 CEBPBP17676 345 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ATP6V1C1P21283 382 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ARRB2P32121 409 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 CPOXP36551 454 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 CD151P48509 253 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ACTR3P61158 418 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 IRF9Q00978 393 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 POU4F1Q01851 419 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 DLG2Q15700 870 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 TPGS2Q68CL5 300 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 KDELC1Q6UW63 502 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 RNF19BQ6ZMZ0 732 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 MTSS1LQ765P7 747 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 TCEAL8Q8IYN2 117 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ZNF683Q8IZ20 524 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 DTWD2Q8NBA8 298 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 KCNV2Q8TDN2 545 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 TCEAL4Q96EI5 215 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 MRGPRX2Q96LB1 330 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 CORO1BQ9BR76 489 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ZYG11BQ9C0D3 744 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 TASP1Q9H6P5 420 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 ATP13A1Q9HD20 1204 aa14.89□□□□□ -0.03
USP4-203ENST00000415188 DMDP11532 3685 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 COL4A3Q01955 1670 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 IGLV3-10A0A075B6K4 115 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 FAM95CA0A1B0GW59 222 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 H0Y3Z8 333 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 NVLO15381 856 aaKnown RBP14.88□□□□□ -0.03
USP4-203ENST00000415188 NPHS1O60500 1241 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 FKBP6O75344 327 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 KRT36O76013 467 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 MT-CYBP00156 380 aaPredicted RBP14.88□□□□□ -0.03
USP4-203ENST00000415188 OR4Q2P0C623 313 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 SLC35E2BP0CK96 405 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 CPB1P15086 417 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 STMN1P16949 149 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 PTPN2P17706 415 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 SMARCB1Q12824 385 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 LAMB3Q13751 1172 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 POU6F1Q14863 301 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 NAA25Q14CX7 972 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 TRIP4Q15650 581 aaPredicted RBP14.88□□□□□ -0.03
USP4-203ENST00000415188 SMAD1Q15797 465 aaKnown RBP14.88□□□□□ -0.03
USP4-203ENST00000415188 PIK3R6Q5UE93 754 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 LRRC8EQ6NSJ5 796 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 AAGABQ6PD74 315 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 C14orf80Q86SX3 495 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 SETD3Q86TU7 594 aaPredicted RBP14.88□□□□□ -0.03
USP4-203ENST00000415188 LMNTD2Q8IXW0 634 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 KIRREL3Q8IZU9 778 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 PPFIBP2Q8ND30 876 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 WDR60Q8WVS4 1066 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 DNAJC9Q8WXX5 260 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 IMP4Q96G21 291 aaKnown RBP14.88□□□□□ -0.03
USP4-203ENST00000415188 BTN2A3PQ96KV6 586 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 PGLYRP2Q96PD5 576 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 THTPAQ9BU02 230 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 CCDC28BQ9BUN5 200 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 MRGBPQ9NV56 204 aa14.88□□□□□ -0.03
USP4-203ENST00000415188 AFF4Q9UHB7 1163 aaKnown RBP14.88□□□□□ -0.03
USP4-203ENST00000415188 ZFHX2Q9C0A1 2572 aaPredicted RBP14.87□□□□□ -0.03
USP4-203ENST00000415188 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.87□□□□□ -0.03
USP4-203ENST00000415188 MATN2O00339 956 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 HDAC3O15379 428 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 CCNT2O60583 730 aaKnown RBP14.87□□□□□ -0.03
USP4-203ENST00000415188 GFRA3O60609 400 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 VAPBO95292 243 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 VNN2O95498 520 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 MOCS2O96007 188 aaPredicted RBP14.87□□□□□ -0.03
USP4-203ENST00000415188 AHSGP02765 367 aa14.87□□□□□ -0.03
USP4-203ENST00000415188 DCNP07585 359 aaKnown RBP14.87□□□□□ -0.03
USP4-203ENST00000415188 ARNTP27540 789 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms