RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 IER2Q9BTL4 223 aa14.29□□□□□ -0.12
SF3B1-204ENST00000414963 CHRDQ9H2X0 955 aa14.29□□□□□ -0.12
SF3B1-204ENST00000414963 PCDH12Q9NPG4 1184 aa14.29□□□□□ -0.12
SF3B1-204ENST00000414963 DYRK4Q9NR20 520 aa14.29□□□□□ -0.12
SF3B1-204ENST00000414963 MOCS1Q9NZB8 636 aa14.29□□□□□ -0.12
SF3B1-204ENST00000414963 ZNF711Q9Y462 761 aa14.29□□□□□ -0.12
SF3B1-204ENST00000414963 TCF20Q9UGU0 1960 aaKnown RBP14.29□□□□□ -0.12
SF3B1-204ENST00000414963 NPIPB15A6NHN6 443 aaPredicted RBP14.28□□□□□ -0.12
SF3B1-204ENST00000414963 AURKAO14965 403 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 MID1O15344 667 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 AP1G1O43747 822 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 PRKCGP05129 697 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 CYP2A6P11509 494 aaPredicted RBP14.28□□□□□ -0.12
SF3B1-204ENST00000414963 ADRB3P13945 408 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 ZNF30P17039 623 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 LPOP22079 712 aaPredicted RBP14.28□□□□□ -0.12
SF3B1-204ENST00000414963 NMBRP28336 390 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 SSTR1P30872 391 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 VIPR1P32241 457 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 PHBP35232 272 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 DRD3P35462 400 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 HMGCLP35914 325 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 P2RY2P41231 377 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 NEK3P51956 506 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 ZNF140P52738 457 aaPredicted RBP14.28□□□□□ -0.12
SF3B1-204ENST00000414963 METAP1P53582 386 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 SFSWAPQ12872 951 aaKnown RBP14.28□□□□□ -0.12
SF3B1-204ENST00000414963 SLC29A2Q14542 456 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 CRYMQ14894 314 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 PTPRRQ15256 657 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 SKIDA1Q1XH10 827 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 PIP5KL1Q5T9C9 394 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 ERAP2Q6P179 960 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 FBXL19Q6PCT2 694 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 TRIM67Q6ZTA4 783 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 GLT6D1Q7Z4J2 308 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 RAVER1Q8IY67 606 aaKnown RBP14.28□□□□□ -0.12
SF3B1-204ENST00000414963 IQCKQ8N0W5 287 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 AADATQ8N5Z0 425 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 GSDMBQ8TAX9 411 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 EID2BQ96D98 161 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 MFSD3Q96ES6 412 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 MRGPRX1Q96LB2 322 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 ZNF778Q96MU6 729 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 ZFYVE1Q9HBF4 777 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 NLE1Q9NVX2 485 aaPredicted RBP14.28□□□□□ -0.12
SF3B1-204ENST00000414963 IL17CQ9P0M4 197 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 B4GALT6Q9UBX8 382 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 SIT1Q9Y3P8 196 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 ARL5AQ9Y689 179 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.28□□□□□ -0.12
SF3B1-204ENST00000414963 RPS6KL1Q9Y6S9 549 aa14.28□□□□□ -0.12
SF3B1-204ENST00000414963 H0Y858 1186 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 SLC7A4O43246 635 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 SPINT1O43278 529 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 DCXO43602 365 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 ACSL3O95573 720 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 DNTTP04053 509 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 NUDT17P0C025 328 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 XPAP23025 273 aaPredicted RBP14.27□□□□□ -0.13
SF3B1-204ENST00000414963 MMP12P39900 470 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 MAGEA9P43362 315 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 PTPN5P54829 565 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 ELP6Q0PNE2 266 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 CNTN1Q12860 1018 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 RALGDSQ12967 914 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 SEPT6Q14141 434 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 CASP8Q14790 479 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 CNGA3Q16281 694 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 POM121L1PQ3SYA9 428 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 TMEM52BQ4KMG9 183 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 UBAP2Q5T6F2 1119 aaKnown RBP14.27□□□□□ -0.13
SF3B1-204ENST00000414963 KIAA0930Q6ICG6 404 aaPredicted RBP14.27□□□□□ -0.13
SF3B1-204ENST00000414963 ESRP1Q6NXG1 681 aaKnown RBP14.27□□□□□ -0.13
SF3B1-204ENST00000414963 USP30Q70CQ3 517 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 HDXQ7Z353 690 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 LYSMD3Q7Z3D4 306 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 SPEM1Q8N4L4 309 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.27□□□□□ -0.13
SF3B1-204ENST00000414963 OR13J1Q8NGT2 312 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 UBLCP1Q8WVY7 318 aaPredicted RBP14.27□□□□□ -0.13
SF3B1-204ENST00000414963 SIPA1Q96FS4 1042 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 CFAP36Q96G28 342 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 SGSM3Q96HU1 749 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 UHRF1Q96T88 793 aaPredicted RBP14.27□□□□□ -0.13
SF3B1-204ENST00000414963 TRIM56Q9BRZ2 755 aaKnown RBP14.27□□□□□ -0.13
SF3B1-204ENST00000414963 GPR63Q9BZJ6 419 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 POLMQ9NP87 494 aaPredicted RBP14.27□□□□□ -0.13
SF3B1-204ENST00000414963 KCTD3Q9Y597 815 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 ANKRD36A6QL64 1941 aa14.27□□□□□ -0.13
SF3B1-204ENST00000414963 A0A087WUV0 522 aaPredicted RBP14.26□□□□□ -0.13
SF3B1-204ENST00000414963 C1orf232A0A0U1RR37 186 aa14.26□□□□□ -0.13
SF3B1-204ENST00000414963 TCRBV9S1A1TA0A576 114 aa14.26□□□□□ -0.13
SF3B1-204ENST00000414963 RGSL1A5PLK6 1076 aa14.26□□□□□ -0.13
SF3B1-204ENST00000414963 H7C0S8 307 aa14.26□□□□□ -0.13
SF3B1-204ENST00000414963 PSMD11O00231 422 aa14.26□□□□□ -0.13
SF3B1-204ENST00000414963 CLDN7O95471 211 aa14.26□□□□□ -0.13
SF3B1-204ENST00000414963 C1QAP02745 245 aa14.26□□□□□ -0.13
SF3B1-204ENST00000414963 GABRG2P18507 467 aa14.26□□□□□ -0.13
SF3B1-204ENST00000414963 PAMP19021 973 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms