RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CCDC181Q5TID7 509 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 ADAT2Q7Z6V5 191 aaKnown RBP9.28□□□□□ -0.92
VPS53-203ENST00000401468 MMAAQ8IVH4 418 aaKnown RBP9.28□□□□□ -0.92
VPS53-203ENST00000401468 STK40Q8N2I9 435 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 VWA5B2Q8N398 1253 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 HDDC3Q8N4P3 179 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 CHCHD4Q8N4Q1 142 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 ATP11CQ8NB49 1132 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 TSEN2Q8NCE0 465 aaKnown RBP9.28□□□□□ -0.92
VPS53-203ENST00000401468 CCNYQ8ND76 341 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 OR2T3Q8NH03 318 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 ARRDC2Q8TBH0 407 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 C1orf54Q8WWF1 131 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 IMP4Q96G21 291 aaKnown RBP9.28□□□□□ -0.92
VPS53-203ENST00000401468 LRIG1Q96JA1 1093 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 NSMCE3Q96MG7 304 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 NUDCD1Q96RS6 583 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 TUBGCP5Q96RT8 1024 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 FAM118BQ9BPY3 351 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 TMEM121Q9BTD3 319 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 AP1M1Q9BXS5 423 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 RSPH9Q9H1X1 276 aaPredicted RBP9.28□□□□□ -0.92
VPS53-203ENST00000401468 L2HGDHQ9H9P8 463 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 SUN2Q9UH99 717 aa9.28□□□□□ -0.92
VPS53-203ENST00000401468 EVLQ9UI08 416 aaPredicted RBP9.28□□□□□ -0.92
VPS53-203ENST00000401468 RP1P56715 2156 aa9.27□□□□□ -0.92
VPS53-203ENST00000401468 GOLGA6L10A0A0M3HER8 536 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 TSPAN11A1L157 253 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 C10orf142B7Z368 130 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 H7C0C1 242 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 RNF103O00237 685 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 WNT9AO14904 365 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 FOXD2O60548 495 aaPredicted RBP9.27□□□□□ -0.93
VPS53-203ENST00000401468 JCHAINP01591 159 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 MMP2P08253 660 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 COILP38432 576 aaPredicted RBP9.27□□□□□ -0.93
VPS53-203ENST00000401468 PAFAH1B1P43034 410 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 ATP5OP48047 213 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 AP1S1P61966 158 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 GRM3Q14832 879 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 PEAR1Q5VY43 1037 aaPredicted RBP9.27□□□□□ -0.93
VPS53-203ENST00000401468 LEKR1Q6ZMV7 388 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 DPY19L3Q6ZPD9 716 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 ZNF567Q8N184 647 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 BBS5Q8N3I7 341 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 KDF1Q8NAX2 398 aaPredicted RBP9.27□□□□□ -0.93
VPS53-203ENST00000401468 TMIEQ8NEW7 156 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 SPATA4Q8NEY3 305 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 ATL2Q8NHH9 583 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 HCAR2Q8TDS4 363 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 SETD7Q8WTS6 366 aaKnown RBP9.27□□□□□ -0.93
VPS53-203ENST00000401468 NSMCE1Q8WV22 266 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 BIRC7Q96CA5 298 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 ECHDC3Q96DC8 303 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 GDAP1L1Q96MZ0 367 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 SPATA13Q96N96 652 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 MYOCQ99972 504 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 GORASP1Q9BQQ3 440 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 POLR1EQ9GZS1 481 aaKnown RBP9.27□□□□□ -0.93
VPS53-203ENST00000401468 GAREM1Q9H706 876 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 HAUS2Q9NVX0 235 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 RBM22Q9NW64 420 aaKnown RBP eCLIP9.27□□□□□ -0.93
VPS53-203ENST00000401468 PPM1HQ9ULR3 514 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 BTBD3Q9Y2F9 522 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 SNX11Q9Y5W9 270 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 LRP4O75096 1905 aa9.27□□□□□ -0.93
VPS53-203ENST00000401468 ZFC3H1O60293 1989 aaKnown RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 ASXL3Q9C0F0 2248 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 METTL12A8MUP2 240 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 TRAFD1O14545 582 aaPredicted RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 BCAT2O15382 392 aaPredicted RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 KCNN4O15554 427 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 HTRA2O43464 458 aaPredicted RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 FZD6O60353 706 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 SOCS5O75159 536 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 RNASEH2AO75792 299 aaKnown RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 URI1O94763 535 aaPredicted RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 POP4O95707 220 aaKnown RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 SEMA4FO95754 770 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 IGSF6O95976 241 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 IGLV3-19P01714 112 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 DNTTP04053 509 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 CTSLP07711 333 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 MAT2AP31153 395 aaKnown RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 CCNHP51946 323 aaPredicted RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 RHOAP61586 193 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 SNRPD1P62314 119 aaKnown RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 ZBTB16Q05516 673 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 CKAP4Q07065 602 aaKnown RBP9.26□□□□□ -0.93
VPS53-203ENST00000401468 NIPAL4Q0D2K0 466 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 ZNF235Q14590 738 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 HLA-BQ31612 363 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 MYLK3Q32MK0 819 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 RNFT1Q5M7Z0 435 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 ANKRD20A2Q5SQ80 823 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 SYCP2LQ5T4T6 812 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 ANKRD20A1Q5TYW2 823 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 ANKRD20A3Q5VUR7 823 aa9.26□□□□□ -0.93
VPS53-203ENST00000401468 DARS2Q6PI48 645 aaKnown RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms