RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ATP13A1Q9HD20 1204 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 TRPV2Q9Y5S1 764 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 UBE2QL1A1L167 161 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 HMBSP08397 361 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 SULT2A1Q06520 285 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 TRIM48Q8IWZ4 208 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 PTGR2Q8N8N7 351 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 ENDOVQ8N8Q3 282 aaKnown RBP10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 PCDH18Q9HCL0 1135 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 VWA7Q9Y334 891 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 TUBGCP6Q96RT7 1819 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 AQP12BA6NM10 295 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 PRR5-ARHGAP8B1AHC4 643 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 ANKRD63C9JTQ0 380 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 GLUD2P49448 558 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 ARHGAP8P85298 464 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 TEAD4Q15561 434 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 CCNYL2Q5T2Q4 361 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 AQP12AQ8IXF9 295 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 SEC14L4Q9UDX3 406 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 FBXO5Q9UKT4 447 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 R3HDM2Q9Y2K5 976 aaKnown RBP10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 NINQ8N4C6 2090 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 H0YJX3 145 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC7A1P30825 629 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 AP3S2P59780 193 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 PEX6Q13608 980 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 ADGRE1Q14246 886 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 SMURF2Q9HAU4 748 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 NEK6Q9HC98 313 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 EURLQ9NYK6 297 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 RGS10O43665 173 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 USP17L7P0C7H9 530 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 ZNF286BP0CG31 522 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 FAUP35544 74 aaKnown RBP10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 CRTC3Q6UUV7 619 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 ARHGAP36Q6ZRI8 547 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 ZNF317Q96PQ6 595 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 RACGAP1Q9H0H5 632 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 TBCCD1Q9NVR7 557 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 ARAP2Q8WZ64 1704 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 CICQ96RK0 1608 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 CKMP06732 381 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 FAM163BP0C2L3 166 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 POU1F1P28069 291 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 UGT2B15P54855 530 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 LGALS3BPQ08380 585 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 KLF10Q13118 480 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 SELENOMQ8WWX9 145 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 KREMEN1Q96MU8 473 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 TUBGCP5Q96RT8 1024 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 GIT1Q9Y2X7 761 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 DOT1LQ8TEK3 1739 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 SDC2P34741 201 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC7A2P52569 658 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 DGKKQ5KSL6 1271 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 DENND5AQ6IQ26 1287 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 NECAB2Q7Z6G3 386 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 LPCAT1Q8NF37 534 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 OR4L1Q8NH43 312 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 GIPC3Q8TF64 312 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 BTN2A2Q8WVV5 523 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 IPCEF1Q8WWN9 437 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 MED8Q96G25 268 aa10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 DDX4Q9NQI0 724 aaKnown RBP10.31□□□□□ -0.76
CCDC88A-202ENST00000336838 FAM47E-STBD1D6RA91 191 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 UBXN8O00124 270 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 CTSHP09668 335 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 TCF4P15884 667 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 AOC1P19801 751 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 TYMPP19971 482 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 PSMA1P25786 263 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 RBM48Q5RL73 367 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 ZNF621Q6ZSS3 439 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 FAM47BQ8NA70 645 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 ARL8BQ9NVJ2 186 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 KCPQ6ZWJ8 1503 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 LGALS2P05162 132 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 CCNCP24863 283 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 RCVRNP35243 200 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 ATP5C1P36542 298 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 MFSD10Q14728 455 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 CCDC149Q6ZUS6 474 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 ZC3H3Q8IXZ2 948 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 CARNMT1Q8N4J0 409 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 PLD5Q8N7P1 536 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 CPT1BQ92523 772 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 GMIPQ9P107 970 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 XPR1Q9UBH6 696 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 PAPSS1O43252 624 aaPredicted RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC6A2P23975 617 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 EPHA3P29320 983 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 CD86P42081 329 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 TAS2R40P59535 323 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 ORC1Q13415 861 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 ATP13A4Q4VNC1 1196 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 FAM220AQ7Z4H9 259 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 HJURPQ8NCD3 748 aaPredicted RBP10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 OR2T12Q8NG77 320 aa10.3□□□□□ -0.76
CCDC88A-202ENST00000336838 C10orf82Q8WW14 230 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms