RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 TP53I13Q8NBR0 393 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-201ENST00000332345 ACTL9Q8TC94 416 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 QKIQ96PU8 341 aaKnown RBP eCLIP14.06□□□□□ -0.167e-12■■■■■ 80.9
LIMS1-201ENST00000332345 MCCC1Q96RQ3 725 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-201ENST00000332345 RBM15Q96T37 977 aaKnown RBP eCLIP14.06□□□□□ -0.16
LIMS1-201ENST00000332345 TDRD1Q9BXT4 1180 aaKnown RBP14.06□□□□□ -0.16
LIMS1-201ENST00000332345 CEP41Q9BYV8 373 aa14.06□□□□□ -0.16
LIMS1-201ENST00000332345 KLHL8Q9P2G9 620 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-201ENST00000332345 TDRD6O60522 2096 aaKnown RBP14.06□□□□□ -0.16
LIMS1-201ENST00000332345 A0A0J9YYE9 177 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 ANKRD66B4E2M5 251 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 PSMD11O00231 422 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 FLRT2O43155 660 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 RECQL5O94762 991 aaPredicted RBP14.05□□□□□ -0.16
LIMS1-201ENST00000332345 STK10O94804 968 aaKnown RBP14.05□□□□□ -0.16
LIMS1-201ENST00000332345 HEXIM1O94992 359 aaKnown RBP14.05□□□□□ -0.16
LIMS1-201ENST00000332345 PRLP01236 227 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 TRBC1P01850 177 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 ITGAVP06756 1048 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 MMP2P08253 660 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 RBP3P10745 1247 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 CTPS1P17812 591 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 HNF1BP35680 557 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 NOVA1P51513 510 aaKnown RBP14.05□□□□□ -0.16
LIMS1-201ENST00000332345 THOP1P52888 689 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 PFN3P60673 137 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 WASHC5Q12768 1159 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 RALGDSQ12967 914 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 IHHQ14623 411 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 SLC14A2Q15849 920 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 WSCD2Q2TBF2 565 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 INAVAQ3KP66 663 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 MEI1Q5TIA1 1274 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 CCDC70Q6NSX1 233 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 DARS2Q6PI48 645 aaKnown RBP14.05□□□□□ -0.16
LIMS1-201ENST00000332345 CDKL3Q8IVW4 592 aaPredicted RBP14.05□□□□□ -0.16
LIMS1-201ENST00000332345 NAXDQ8IW45 347 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 CBARPQ8N350 705 aaPredicted RBP14.05□□□□□ -0.16
LIMS1-201ENST00000332345 DEFB124Q8NES8 71 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 TRIM58Q8NG06 486 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 RHBDD1Q8TEB9 315 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 HERPUD2Q9BSE4 406 aa14.05□□□□□ -0.16
LIMS1-201ENST00000332345 MBNL1Q9NR56 388 aaKnown RBP14.05□□□□□ -0.16
LIMS1-201ENST00000332345 SPTY2D1-AS1A0A0U1RR47 76 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 ZSCAN12O43309 604 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 ZNF30P17039 623 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 RBL1P28749 1068 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 IGFALSP35858 605 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 GRK6P43250 576 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 TNNT3P45378 269 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-201ENST00000332345 IL9RQ01113 521 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 PDE1CQ14123 709 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-201ENST00000332345 INPP5AQ14642 412 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 IRF4Q15306 451 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 CNGA3Q16281 694 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 SEL1L2Q5TEA6 688 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 DENND2CQ68D51 928 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 PSAPL1Q6NUJ1 521 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 ZNF567Q8N184 647 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 SLC22A18ASQ8N1D0 253 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 LPCAT1Q8NF37 534 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 SAP25Q8TEE9 199 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 COQ10AQ96MF6 247 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 CDC6Q99741 560 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 MLPHQ9BV36 600 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-201ENST00000332345 GPR27Q9NS67 375 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 FAM153AQ9UHL3 310 aa14.04□□□□□ -0.16
LIMS1-201ENST00000332345 NPIPB15A6NHN6 443 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-201ENST00000332345 PCCBP05166 539 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 ALPIP09923 528 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 HTR1BP28222 390 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 HNRNPKP61978 463 aaKnown RBP eCLIP14.03□□□□□ -0.16
LIMS1-201ENST00000332345 FOXK2Q01167 660 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 CDK18Q07002 472 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 BNIP3Q12983 259 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 MTM1Q13496 603 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 GSE1Q14687 1217 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 SHBQ15464 509 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 TRIP6Q15654 476 aaKnown RBP14.03□□□□□ -0.16
LIMS1-201ENST00000332345 ITPRIPL1Q6GPH6 555 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 CRTC1Q6UUV9 634 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 KDELC2Q7Z4H8 507 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 PARGQ86W56 976 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 RAVER1Q8IY67 606 aaKnown RBP14.03□□□□□ -0.16
LIMS1-201ENST00000332345 ATL2Q8NHH9 583 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 SPATA22Q8NHS9 363 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 CCHCR1Q8TD31 782 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 TADA1Q96BN2 335 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 CAMK1GQ96NX5 476 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 FCRL5Q96RD9 977 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 SRPK1Q96SB4 655 aaKnown RBP14.03□□□□□ -0.16
LIMS1-201ENST00000332345 APOOQ9BUR5 198 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 DNAJC28Q9NX36 388 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 PCOLCE2Q9UKZ9 415 aa14.03□□□□□ -0.16
LIMS1-201ENST00000332345 NEMP2A6NFY4 417 aa14.02□□□□□ -0.17
LIMS1-201ENST00000332345 CAPN8A6NHC0 703 aa14.02□□□□□ -0.17
LIMS1-201ENST00000332345 GOLGA8CPA6NN73 597 aa14.02□□□□□ -0.17
LIMS1-201ENST00000332345 H3BM21 787 aa14.02□□□□□ -0.17
LIMS1-201ENST00000332345 KCNN4O15554 427 aa14.02□□□□□ -0.17
LIMS1-201ENST00000332345 PMPCBO75439 489 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms