RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 NBPF12Q5TAG4 269 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 ZNF773Q6PK81 442 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 SPRED1Q7Z699 444 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 NSUN6Q8TEA1 469 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 OLFM1Q99784 485 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 MCMBPQ9BTE3 642 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 SLC25A23Q9BV35 468 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 MLPHQ9BV36 600 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 SCUBE2Q9NQ36 999 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 EXD2Q9NVH0 621 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 RAD54BQ9Y620 910 aa13.5□□□□□ -0.25
CCDC88C-201ENST00000331194 FAM47E-STBD1D6RA91 191 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 PPP6CO00743 305 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 UBFD1O14562 309 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 KPNA6O60684 536 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 FSHRP23945 695 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 IFITM2Q01629 132 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 SLC13A2Q13183 592 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 MPZL3Q6UWV2 235 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 CUZD1Q86UP6 607 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 PSTKQ8IV42 348 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 ANKRD13AQ8IZ07 590 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 SIX5Q8N196 739 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 PACRGLQ8N7B6 248 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 PTCD2Q8WV60 388 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 MRPL45Q9BRJ2 306 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 ING2Q9H160 280 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 CDT1Q9H211 546 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 PTPRHQ9HD43 1115 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 EIF2B3Q9NR50 452 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 TMEM9Q9P0T7 183 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 SEPT3Q9UH03 358 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 SPATA31C2B4DYI2 1134 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 VWA5AO00534 786 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 APOA4P06727 396 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 ASNSP08243 561 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 PCNAP12004 261 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 TCF3P15923 654 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 CAPN3P20807 821 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 TGM1P22735 817 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 S100A1P23297 94 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 INPP5AQ14642 412 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 KDELC2Q7Z4H8 507 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 SLC22A16Q86VW1 577 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 HTRA1Q92743 480 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 SPATA17Q96L03 361 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 MYRFLQ96LU7 910 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 MIR1-1HGQ9H1L0 117 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 MTRRQ9UBK8 725 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 DSEQ9UL01 958 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 RABL2BQ9UNT1 228 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 ERVK-11Q9UQG0 969 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 SHROOM3Q8TF72 1996 aa13.49□□□□□ -0.25
CCDC88C-201ENST00000331194 A0A0J9YYE9 177 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 ZBBXA8MT70 800 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 FAM72CH0Y354 149 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 INMTO95050 263 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 PTPN3P26045 913 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 CD68P34810 354 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 CDH13P55290 713 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 TAS2R39P59534 338 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 ADAM17P78536 824 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 PPP1R8Q12972 351 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 UGT3A2Q3SY77 523 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 FAM72AQ5TYM5 149 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 TMEM236Q5W0B7 351 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 FAM72DQ6L9T8 149 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 FAM45BPQ6NSW5 357 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 SLC16A12Q6ZSM3 486 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 SLCO6A1Q86UG4 719 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 FAM72BQ86X60 149 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 TERB1Q8NA31 727 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 TRPV3Q8NET8 790 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 RDH11Q8TC12 318 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 FAM45AQ8TCE6 357 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 RAB2BQ8WUD1 216 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 FKBP10Q96AY3 582 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 CTRCQ99895 268 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 MRPL46Q9H2W6 279 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 MARCH7Q9H992 704 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 MID2Q9UJV3 735 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 PTGES3LE9PB15 166 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 ADORA2BP29275 332 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 TUFMP49411 452 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 BCAT1P54687 386 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 ADARB1P78563 741 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 MAPRE2Q15555 327 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 MAPRE1Q15691 268 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 TMTC4Q5T4D3 741 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 EXOC8Q8IYI6 725 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 SPARTQ8N0X7 666 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 SLC22A17Q8WUG5 538 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 ZNF641Q96N77 438 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 TMEM74Q96NL1 305 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 NT5C1AQ9BXI3 368 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 CEP44Q9C0F1 390 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 DPEP3Q9H4B8 488 aa13.48□□□□□ -0.25
CCDC88C-201ENST00000331194 SCHIP1Q9P0W5 487 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms