RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 UGT1A1P22309 533 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 UGT1A4P22310 534 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 UGT1A3P35503 534 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 UGT1A5P35504 534 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 OGFOD2Q6N063 350 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 FAM45BPQ6NSW5 357 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 NECAB2Q7Z6G3 386 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 TAMM41Q96BW9 452 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 MRPL57Q9BQC6 102 aaKnown RBP15.41■□□□□ 0.06
SHH-201ENST00000297261 ULBP1Q9BZM6 244 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 ZMYM5Q9UJ78 669 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 INVSQ9Y283 1065 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 GON4LQ3T8J9 2241 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 CENPXA8MT69 81 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 TFECO14948 347 aaPredicted RBP15.41■□□□□ 0.06
SHH-201ENST00000297261 ALOX15P16050 662 aaPredicted RBP15.41■□□□□ 0.06
SHH-201ENST00000297261 ZNF12P17014 697 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 IL12AP29459 219 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 PRKCZQ05513 592 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 PDZK1Q5T2W1 519 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 IL23RQ5VWK5 629 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 LCLAT1Q6UWP7 414 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 RASAL3Q86YV0 1011 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 ADHFE1Q8IWW8 467 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 S100ZQ8WXG8 99 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 STMN3Q9NZ72 180 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 SPASTQ9UBP0 616 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 FETUBQ9UGM5 382 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 TRAF6Q9Y4K3 522 aa15.41■□□□□ 0.06
SHH-201ENST00000297261 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.41■□□□□ 0.06
SHH-201ENST00000297261 A0A0J9YYE9 177 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 CA12O43570 354 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 ERCC2P18074 760 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 MSH3P20585 1137 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 BDNFP23560 247 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 ALDH4A1P30038 563 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 MARC1Q5VT66 337 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 KCTD8Q6ZWB6 473 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 XYLT1Q86Y38 959 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 BBS7Q8IWZ6 715 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 C19orf18Q8NEA5 215 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 MCFD2Q8NI22 146 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 TBL1YQ9BQ87 522 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 GIN1Q9NXP7 522 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 EFCAB10A6NFE3 127 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 BTN3A1O00481 513 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 TFPTP0C1Z6 253 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 PABPC4LP0CB38 370 aaKnown RBP15.4■□□□□ 0.06
SHH-201ENST00000297261 PPP3CCP48454 512 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 BNIP2Q12982 314 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 KCNA10Q16322 511 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 SKA1Q96BD8 255 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 OR52B2Q96RD2 323 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 PKP2Q99959 881 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 HGH1Q9BTY7 390 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 PRKD2Q9BZL6 878 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 PRKAG2Q9UGJ0 569 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 CLDN25C9JDP6 229 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 PQBP1O60828 265 aaKnown RBP15.4■□□□□ 0.06
SHH-201ENST00000297261 CST1P01037 141 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 LINC00032P0C843 101 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 NPR3P17342 541 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 SOAT1P35610 550 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 GRIA1P42261 906 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 FAM187BQ17R55 369 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 VPS26BQ4G0F5 336 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 PCID2Q5JVF3 399 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 LUZP2Q86TE4 346 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 AKAP14Q86UN6 197 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 CUZD1Q86UP6 607 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 CNTD1Q8N815 330 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 FLCNQ8NFG4 579 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 SEPT8Q92599 483 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 UTP4Q969X6 686 aaKnown RBP15.4■□□□□ 0.06
SHH-201ENST00000297261 TPD52L3Q96J77 140 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 PLEKHA8Q96JA3 519 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 WDR12Q9GZL7 423 aaKnown RBP15.4■□□□□ 0.06
SHH-201ENST00000297261 UNC93B1Q9H1C4 597 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 RMND5AQ9H871 391 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 ACTR8Q9H981 624 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 CHRAC1Q9NRG0 131 aa15.4■□□□□ 0.06
SHH-201ENST00000297261 PDLIM1O00151 329 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 ENDOD1O94919 500 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 USP17L7P0C7H9 530 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 EPS8Q12929 822 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 TIGD7Q6NT04 549 aaPredicted RBP15.39■□□□□ 0.05
SHH-201ENST00000297261 IL27RAQ6UWB1 636 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 ENKURQ8TC29 256 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 DDX1Q92499 740 aaKnown RBP15.39■□□□□ 0.05
SHH-201ENST00000297261 PROX1Q92786 737 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 NXNL1Q96CM4 212 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 SMARCD1Q96GM5 515 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 TWNKQ96RR1 684 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 SDCBP2Q9H190 292 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 SMPD3Q9NY59 655 aaPredicted RBP15.39■□□□□ 0.05
SHH-201ENST00000297261 KLHL3Q9UH77 587 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 BOLA2-SMG1P6H3BVE0 249 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 F2P00734 622 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 CYP4B1P13584 511 aa15.39■□□□□ 0.05
SHH-201ENST00000297261 ITGB6P18564 788 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms